Literature DB >> 16644792

Evolutionary trace report_maker: a new type of service for comparative analysis of proteins.

I Mihalek1, I Res, O Lichtarge.   

Abstract

: Evolutionary trace report_maker offers a new type of service for researchers investigating the function of novel proteins. It pools, from different sources, information about protein sequence, structure and elementary annotation, and to that background superimposes inference about the evolutionary behavior of individual residues, using real-valued evolutionary trace method. As its only input it takes a Protein Data Bank identifier or UniProt accession number, and returns a human-readable document in PDF format, supplemented by the original data needed to reproduce the results quoted in the report.

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Year:  2006        PMID: 16644792     DOI: 10.1093/bioinformatics/btl157

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  38 in total

1.  PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes.

Authors:  Rhonald C Lua; Olivier Lichtarge
Journal:  Bioinformatics       Date:  2010-10-06       Impact factor: 6.937

2.  Accurate Prediction of Docked Protein Structure Similarity.

Authors:  Bahar Akbal-Delibas; Marc Pomplun; Nurit Haspel
Journal:  J Comput Biol       Date:  2015-09       Impact factor: 1.479

3.  Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces.

Authors:  Surendra S Negi; Werner Braun
Journal:  J Mol Model       Date:  2007-09-09       Impact factor: 1.810

4.  Functional specificity lies within the properties and evolutionary changes of amino acids.

Authors:  Saikat Chakrabarti; Stephen H Bryant; Anna R Panchenko
Journal:  J Mol Biol       Date:  2007-08-22       Impact factor: 5.469

Review 5.  Desmosterolosis-phenotypic and molecular characterization of a third case and review of the literature.

Authors:  Christian P Schaaf; Janet Koster; Panagiotis Katsonis; Lisa Kratz; Oleg A Shchelochkov; Fernando Scaglia; Richard I Kelley; Olivier Lichtarge; Hans R Waterham; Marwan Shinawi
Journal:  Am J Med Genet A       Date:  2011-06-10       Impact factor: 2.802

Review 6.  Evolution: a guide to perturb protein function and networks.

Authors:  Olivier Lichtarge; Angela Wilkins
Journal:  Curr Opin Struct Biol       Date:  2010-05-03       Impact factor: 6.809

7.  A multifaceted computational report on the variants effect on KIR2DL3 and IFNL3 candidate gene in HCV clearance.

Authors:  Pratichi Singh; J Febin Prabhu Dass
Journal:  Mol Biol Rep       Date:  2016-07-26       Impact factor: 2.316

8.  Solution structure of inhibitor-free human metalloelastase (MMP-12) indicates an internal conformational adjustment.

Authors:  Rajagopalan Bhaskaran; Mark O Palmier; Nusayba A Bagegni; Xiangyang Liang; Steven R Van Doren
Journal:  J Mol Biol       Date:  2007-10-16       Impact factor: 5.469

9.  Evolutionary Trace Annotation Server: automated enzyme function prediction in protein structures using 3D templates.

Authors:  R Matthew Ward; Eric Venner; Bryce Daines; Stephen Murray; Serkan Erdin; David M Kristensen; Olivier Lichtarge
Journal:  Bioinformatics       Date:  2009-03-23       Impact factor: 6.937

10.  Analysis of HSP90-related folds with MED-SuMo classification approach.

Authors:  Olivia Doppelt-Azeroual; Fabrice Moriaud; François Delfaud; Alexandre G de Brevern
Journal:  Drug Des Devel Ther       Date:  2009-09-21       Impact factor: 4.162

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