Literature DB >> 16642262

Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea.

Shizuka Arakawa1, Takako Sato, Rumi Sato, Jing Zhang, Toshitaka Gamo, Urumu Tsunogai, Akinari Hirota, Yasuhiko Yoshida, Ron Usami, Fumio Inagaki, Chiaki Kato.   

Abstract

Microbial communities inhabiting deep-sea cold seep sediments at the northeastern Japan Sea were characterized by molecular phylogenetic and chemical analyses. White patchy microbial mats were observed along the fault offshore the Hokkaido Island and sediment samples were collected from two stations at the southern foot of the Shiribeshi seamount (M1 site at a depth of 2,961 m on the active fault) and off the Motta Cape site (M2 site at a depth of 3,064 m off the active fault). The phylogenetic and terminal-restriction fragment polymorphism analyses of PCR-amplified 16S rRNA genes revealed that microbial community structures were different between two sampling stations. The members of ANME-2 archaea and diverse bacterial components including sulfate reducers within Deltaproteobacteria were detected from M1 site, indicating the occurrence of biologically mediated anaerobic oxidation of methane, while microbial community at M2 site was predominantly composed of members of Marine Crenarchaeota group I, sulfate reducers of Deltaproteobacteria, and sulfur oxidizers of Epsilonproteobacteria. Chemical analyses of seawater above microbial mats suggested that concentrations of sulfate and methane at M1 site were largely decreased relative to those at M2 site and carbon isotopic composition of methane at M1 site shifted heavier ((13)C-enriched), the results of which are consistent with molecular analyses. These results suggest that the mat microbial communities in deep-sea cold seep sediments at the northeastern Japan Sea are significantly responsible for sulfur and carbon circulations and the geological activity associated with plate movements serves unique microbial habitats in deep-sea environments.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16642262     DOI: 10.1007/s00792-005-0501-0

Source DB:  PubMed          Journal:  Extremophiles        ISSN: 1431-0651            Impact factor:   2.395


  16 in total

1.  Archaeology of Archaea: geomicrobiological record of Pleistocene thermal events concealed in a deep-sea subseafloor environment.

Authors:  F Inagaki; K Takai; T Komatsu; T Kanamatsu; K Fujioka; K Horikoshi
Journal:  Extremophiles       Date:  2001-12       Impact factor: 2.395

2.  Methane-consuming archaea revealed by directly coupled isotopic and phylogenetic analysis.

Authors:  V J Orphan; C H House; K U Hinrichs; K D McKeegan; E F DeLong
Journal:  Science       Date:  2001-07-20       Impact factor: 47.728

3.  Stable carbon and oxygen isotopic analysis of atmospheric carbon monoxide using continuous-flow isotope ratio MS by isotope ratio monitoring of CO.

Authors:  Urumu Tsunogai; Fumiko Nakagawa; Daisuke D Komatsu; Toshitaka Gamo
Journal:  Anal Chem       Date:  2002-11-15       Impact factor: 6.986

4.  Archaea in coastal marine environments.

Authors:  E F DeLong
Journal:  Proc Natl Acad Sci U S A       Date:  1992-06-15       Impact factor: 11.205

5.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

6.  Microbial diversity of cold-seep sediments in Sagami Bay, Japan, as determined by 16S rRNA gene and lipid analyses.

Authors:  Jiasong Fang; Arakawa Shizuka; Chiaki Kato; Stefan Schouten
Journal:  FEMS Microbiol Ecol       Date:  2006-09       Impact factor: 4.194

7.  Diversity and distribution of methanotrophic archaea at cold seeps.

Authors:  Katrin Knittel; Tina Lösekann; Antje Boetius; Renate Kort; Rudolf Amann
Journal:  Appl Environ Microbiol       Date:  2005-01       Impact factor: 4.792

8.  Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the epsilon-Proteobacteria isolated from Okinawa Trough hydrothermal sediments.

Authors:  Fumio Inagaki; Ken Takai; Kenneth H Nealson; Koki Horikoshi
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

9.  Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing epsilon-proteobacterium isolated from hydrothermal sediments in the Mid-Okinawa Trough.

Authors:  Fumio Inagaki; Ken Takai; Hideki Kobayashi; Kenneth H Nealson; Koki Horikoshi
Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

10.  Oregon subduction zone: venting, fauna, and carbonates.

Authors:  L D Kulm; E Suess; J C Moore; B Carson; B T Lewis; S D Ritger; D C Kadko; T M Thornburg; R W Embley; W D Rugh; G J Massoth; M G Langseth; G R Cochrane; R L Scamman
Journal:  Science       Date:  1986-02-07       Impact factor: 47.728

View more
  4 in total

1.  Microbial diversity and activity in hypersaline high Arctic spring channels.

Authors:  Chih-Ying Lay; Nadia C S Mykytczuk; Thomas D Niederberger; Christine Martineau; Charles W Greer; Lyle G Whyte
Journal:  Extremophiles       Date:  2012-01-14       Impact factor: 2.395

2.  Molecular analysis of the nitrogen cycle in deep-sea microorganisms from the Nankai Trough: genes for nitrification and denitrification from deep-sea environmental DNA.

Authors:  Hideyuki Tamegai; Rie Aoki; Shizuka Arakawa; Chiaki Kato
Journal:  Extremophiles       Date:  2006-10-27       Impact factor: 2.395

3.  Phylogenetic and gene expression analysis of cyanobacteria and diatoms in the twilight waters of the temperate northeast Pacific Ocean.

Authors:  Weimin Gao; Xu Shi; Jieying Wu; Yuguang Jin; Weiwen Zhang; Deirdre R Meldrum
Journal:  Microb Ecol       Date:  2011-06-23       Impact factor: 4.552

4.  Microbial life in a fjord: metagenomic analysis of a microbial mat in Chilean patagonia.

Authors:  Juan A Ugalde; Maria J Gallardo; Camila Belmar; Práxedes Muñoz; Nathaly Ruiz-Tagle; Sandra Ferrada-Fuentes; Carola Espinoza; Eric E Allen; Victor A Gallardo
Journal:  PLoS One       Date:  2013-08-28       Impact factor: 3.240

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.