Literature DB >> 16640245

Knowledge discovery in high-dimensional data: case studies and a user survey for the rank-by-feature framework.

Jinwook Seo1, Ben Shneiderman.   

Abstract

Knowledge discovery in high-dimensional data is a challenging enterprise, but new visual analytic tools appear to offer users remarkable powers if they are ready to learn new concepts and interfaces. Our three-year effort to develop versions of the Hierarchical Clustering Explorer (HCE) began with building an interactive tool for exploring clustering results. It expanded, based on user needs, to include other potent analytic and visualization tools for multivariate data, especially the rank-by-feature framework. Our own successes using HCE provided some testimonial evidence of its utility, but we felt it necessary to get beyond our subjective impressions. This paper presents an evaluation of the Hierarchical Clustering Explorer (HCE) using three case studies and an e-mail user survey (n = 57) to focus on skill acquisition with the novel concepts and interface for the rank-by-feature framework. Knowledgeable and motivated users in diverse fields provided multiple perspectives that refined our understanding of strengths and weaknesses. A user survey confirmed the benefits of HCE, but gave less guidance about improvements. Both evaluations suggested improved training methods.

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Year:  2006        PMID: 16640245     DOI: 10.1109/TVCG.2006.50

Source DB:  PubMed          Journal:  IEEE Trans Vis Comput Graph        ISSN: 1077-2626            Impact factor:   4.579


  6 in total

Review 1.  Informing geospatial toolset design: understanding the process of cancer data exploration and analysis.

Authors:  Tanuka Bhowmick; Amy L Griffin; Alan M MacEachren; Brenda C Kluhsman; Eugene J Lengerich
Journal:  Health Place       Date:  2007-10-23       Impact factor: 4.078

2.  Conformational variation of the translocon enhancing chaperone SecDF.

Authors:  Kazuhiro Mio; Tomoya Tsukazaki; Hiroyuki Mori; Masaaki Kawata; Toshio Moriya; Yoshikazu Sasaki; Ryuichiro Ishitani; Koreaki Ito; Osamu Nureki; Chikara Sato
Journal:  J Struct Funct Genomics       Date:  2013-12-25

3.  Topic modeling for systematic review of visual analytics in incomplete longitudinal behavioral trial data.

Authors:  Joshua Rumbut; Hua Fang; Honggong Wang
Journal:  Smart Health (Amst)       Date:  2020-11-13

4.  Supporting cognition in systems biology analysis: findings on users' processes and design implications.

Authors:  Barbara Mirel
Journal:  J Biomed Discov Collab       Date:  2009-02-13

5.  A cognitive task analysis of a visual analytic workflow: Exploring molecular interaction networks in systems biology.

Authors:  Barbara Mirel; Felix Eichinger; Benjamin J Keller; Matthias Kretzler
Journal:  J Biomed Discov Collab       Date:  2011-03-21

6.  Scientists' sense making when hypothesizing about disease mechanisms from expression data and their needs for visualization support.

Authors:  Barbara Mirel; Carsten Görg
Journal:  BMC Bioinformatics       Date:  2014-04-26       Impact factor: 3.169

  6 in total

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