Literature DB >> 16637645

High-resolution terahertz spectroscopy of crystalline trialanine: extreme sensitivity to beta-sheet structure and cocrystallized water.

Karen Siegrist1, Christine R Bucher, Idan Mandelbaum, Angela R Hight Walker, Radhakrishnan Balu, Susan K Gregurick, David F Plusquellic.   

Abstract

High-resolution terahertz absorption spectra (0.06-3 THz) have been obtained at 4.2 K for three crystalline forms of trialanine [H2+-(Ala)3-O-]. The crystal structures differ in their beta-sheet forms (parallel vs antiparallel) and in their water composition (hydrated vs dehydrated antiparallel beta-sheet). The spectra are nearly vibrationally resolved, with little absorption below 1 THz. In sharp contrast to observations made in the mid-IR region, the spectral patterns of all three forms are qualitatively different, illustrating the extreme sensitivity to changes in the intermolecular hydrogen-bonding networks that stabilize peptide crystals. Predictions obtained from a classical force field model (CHARMM) and density functional theory (DFT/PW91) for periodic solids are compared with the X-ray structural data and the terahertz absorption spectra. In general, the results for the parallel beta-sheet are in better agreement with experiment than those for the antiparallel beta-sheet. For all three structures, however, most hydrogen bond distances are underestimated at both levels of theory, and the predicted absorption features are significantly red-shifted for the two antiparallel beta-sheet structures. Moreover, the nuclear motions predicted at the two levels of theory are qualitatively different. These results indicate that the PW91 functional is not sufficient to treat the weak intersheet hydrogen bonding present in the different beta-sheet forms and strongly suggest the need for improved force field models that include three-atom hydrogen-bonding terms for periodic solids.

Entities:  

Year:  2006        PMID: 16637645     DOI: 10.1021/ja058176u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  7 in total

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Authors:  Simon Ebbinghaus; Seung Joong Kim; Matthias Heyden; Xin Yu; Udo Heugen; Martin Gruebele; David M Leitner; Martina Havenith
Journal:  Proc Natl Acad Sci U S A       Date:  2007-12-19       Impact factor: 11.205

2.  Terahertz spectroscopy of bacteriorhodopsin and rhodopsin: similarities and differences.

Authors:  R Balu; H Zhang; E Zukowski; J-Y Chen; A G Markelz; S K Gregurick
Journal:  Biophys J       Date:  2008-01-16       Impact factor: 4.033

3.  Low-frequency vibrational modes and infrared absorbance of red, blue and green opsin.

Authors:  Saravana Prakash Thirumuruganandham; Herbert M Urbassek
Journal:  J Mol Model       Date:  2009-02-03       Impact factor: 1.810

4.  Applying terahertz technology for nondestructive detection of crack initiation in a film-coated layer on a swelling tablet.

Authors:  Wataru Momose; Hiroyuki Yoshino; Yoshifumi Katakawa; Kazunari Yamashita; Keiji Imai; Kazuhiro Sako; Eiji Kato; Akiyoshi Irisawa; Etsuo Yonemochi; Katsuhide Terada
Journal:  Results Pharma Sci       Date:  2012-04-13

5.  Evidence of protein collective motions on the picosecond timescale.

Authors:  Yunfen He; J-Y Chen; J R Knab; Wenjun Zheng; A G Markelz
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

6.  Characterization of peptides self-assembly by low frequency Raman spectroscopy.

Authors:  Maria Ronen; Basanth S Kalanoor; Ziv Oren; Izhar Ron; Yaakov R Tischler; Doron Gerber
Journal:  RSC Adv       Date:  2018-04-30       Impact factor: 3.361

7.  Co-Crystal Formation of Antibiotic Nitrofurantoin Drug and Melamine Co-Former Based on a Vibrational Spectroscopic Study.

Authors:  Ziming Zhang; Qiang Cai; Jiadan Xue; Jianyuan Qin; Jianjun Liu; Yong Du
Journal:  Pharmaceutics       Date:  2019-01-30       Impact factor: 6.321

  7 in total

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