Literature DB >> 16626337

Program report: GENECOUNTING support programs.

D Curtis1, J Knight, P C Sham.   

Abstract

We describe a suite of programs which enhance the usability of GENECOUNTING, a program for estimating haplotype frequencies in unrelated subjects. The programs, called RUNGC, SCANASSOC, COMPGR, SCANGROUP and LDPAIRS, carry out likelihood ratio tests and permutation tests to detect differences in haplotype frequencies between cases and controls,or between predefined groups, and output likely haplotype assignments and tables of linkage disequilibrium statistics between all pairs of markers in a dataset.

Mesh：

Year:  2006        PMID： 16626337     DOI： 10.1111/j.1529-8817.2005.00225.x

Source DB:  PubMed          Journal:  Ann Hum Genet        ISSN： 0003-4800            Impact factor:   1.670


  14 in total

1.  Association of PDE4B polymorphisms and schizophrenia in Northwestern Han Chinese.

Authors:  Fanglin Guan; Chen Zhang; Shuguang Wei; Hongbo Zhang; Xiaomin Gong; Jiali Feng; Chengge Gao; Rong Su; Huanming Yang; Shengbin Li
Journal:  Hum Genet       Date:  2011-12-11       Impact factor: 4.132

2.  Association studies of SEPS1 gene polymorphisms with Hashimoto's thyroiditis in Han Chinese.

Authors:  Miao Li; Bailing Liu; Lu Li; Chen Zhang; Qi Zhou
Journal:  J Hum Genet       Date:  2015-05-28       Impact factor: 3.172

3.  Analysis of new lactotransferrin gene variants in a case-control study related to periodontal disease in dog.

Authors:  Francisco Morinha; Carlos Albuquerque; João Requicha; Isabel Dias; José Leitão; Ivo Gut; Henrique Guedes-Pinto; Carlos Viegas; Estela Bastos
Journal:  Mol Biol Rep       Date:  2011-09-24       Impact factor: 2.316

4.  Variants in the interleukin-1 alpha and beta genes, and the risk for periodontal disease in dogs.

Authors:  C Albuquerque; F Morinha; J Magalhães; J Requicha; I Dias; H Guedes-Pinto; E Bastos; C Viegas
Journal:  J Genet       Date:  2015-12       Impact factor: 1.166

5.  A genetic association study of chromosome 11q22-24 in two different samples implicates the FXYD6 gene, encoding phosphohippolin, in susceptibility to schizophrenia.

Authors:  Khalid Choudhury; Andrew McQuillin; Vinay Puri; Jonathan Pimm; Susmita Datta; Srinivasa Thirumalai; Robert Krasucki; Jacob Lawrence; Nicholas J Bass; Digby Quested; Caroline Crombie; Gillian Fraser; Nicholas Walker; Haitham Nadeem; Sophie Johnson; David Curtis; David St Clair; Hugh M D Gurling
Journal:  Am J Hum Genet       Date:  2007-03-01       Impact factor: 11.025

6.  Investigation into the ability of SNP chipsets and microsatellites to detect association with a disease locus.

Authors:  D Curtis; A E Vine; J Knight
Journal:  Ann Hum Genet       Date:  2008-03-18       Impact factor: 1.670

7.  Allelic association studies of genome wide association data can reveal errors in marker position assignments.

Authors:  David Curtis
Journal:  BMC Genet       Date:  2007-06-08       Impact factor: 2.797

8.  Comparison of artificial neural network analysis with other multimarker methods for detecting genetic association.

Authors:  David Curtis
Journal:  BMC Genet       Date:  2007-07-18       Impact factor: 2.797

9.  Evidence for the association of the DAOA (G72) gene with schizophrenia and bipolar disorder but not for the association of the DAO gene with schizophrenia.

Authors:  Nicholas J Bass; Susmita R Datta; Andrew McQuillin; Vinay Puri; Khalid Choudhury; Srinivasa Thirumalai; Jacob Lawrence; Digby Quested; Jonathan Pimm; David Curtis; Hugh Md Gurling
Journal:  Behav Brain Funct       Date:  2009-07-08       Impact factor: 3.759

10.  A simple method for assessing the strength of evidence for association at the level of the whole gene.

Authors:  David Curtis; Anna E Vine; Jo Knight
Journal:  Adv Appl Bioinform Chem       Date:  2008-11-17
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