Literature DB >> 16624899

Mapping novel traits by array-assisted bulk segregant analysis in Saccharomyces cerevisiae.

Matthew J Brauer1, Cheryl M Christianson, Dave A Pai, Maitreya J Dunham.   

Abstract

We demonstrate a new method, microarray-assisted bulk segregant analysis, for mapping traits in yeast by genotyping pooled segregants. We apply a probabilistic model to the progeny of a single cross and as little as two microarray hybridizations to reliably map an auxotrophic marker, a Mendelian trait, and a major-effect quantitative trait locus.

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Year:  2006        PMID： 16624899      PMCID： PMC1526703          DOI： 10.1534/genetics.106.057927

Source DB:  PubMed          Journal:  Genetics        ISSN： 0016-6731            Impact factor:   4.562


  14 in total

1.  Genetic diversity in yeast assessed with whole-genome oligonucleotide arrays.

Authors:  Elizabeth A Winzeler; Cristian I Castillo-Davis; Guy Oshiro; David Liang; Daniel R Richards; Yingyao Zhou; Daniel L Hartl
Journal:  Genetics       Date:  2003-01       Impact factor: 4.562

2.  Quantitative trait loci mapped to single-nucleotide resolution in yeast.

Authors:  Adam M Deutschbauer; Ronald W Davis
Journal:  Nat Genet       Date:  2005-11-06       Impact factor: 38.330

3.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations.

Authors:  R W Michelmore; I Paran; R V Kesseli
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

4.  Direct allelic variation scanning of the yeast genome.

Authors:  E A Winzeler; D R Richards; A R Conway; A L Goldstein; S Kalman; M J McCullough; J H McCusker; D A Stevens; L Wodicka; D J Lockhart; R W Davis
Journal:  Science       Date:  1998-08-21       Impact factor: 47.728

5.  Rapid array mapping of circadian clock and developmental mutations in Arabidopsis.

Authors:  Samuel P Hazen; Justin O Borevitz; Frank G Harmon; Jose L Pruneda-Paz; Thomas F Schultz; Marcelo J Yanovsky; Sarah J Liljegren; Joseph R Ecker; Steve A Kay
Journal:  Plant Physiol       Date:  2005-05-20       Impact factor: 8.340

6.  Genetic dissection of transcriptional regulation in budding yeast.

Authors:  Rachel B Brem; Gaël Yvert; Rebecca Clinton; Leonid Kruglyak
Journal:  Science       Date:  2002-03-28       Impact factor: 47.728

7.  Whole genome genetic-typing in yeast using high-density oligonucleotide arrays.

Authors:  E A Winzeler; B Lee; J H McCusker; R W Davis
Journal:  Parasitology       Date:  1999       Impact factor: 3.234

8.  Large-scale identification of single-feature polymorphisms in complex genomes.

Authors:  Justin O Borevitz; David Liang; David Plouffe; Hur-Song Chang; Tong Zhu; Detlef Weigel; Charles C Berry; Elizabeth Winzeler; Joanne Chory
Journal:  Genome Res       Date:  2003-03       Impact factor: 9.043

9.  Genome-wide detection of polymorphisms at nucleotide resolution with a single DNA microarray.

Authors:  David Gresham; Douglas M Ruderfer; Stephen C Pratt; Joseph Schacherer; Maitreya J Dunham; David Botstein; Leonid Kruglyak
Journal:  Science       Date:  2006-03-09       Impact factor: 47.728

10.  Isolation of Sets of a, α, a/α, a/a and α/α isogenic strains in Saccharomyces cerevisiae.

Authors:  C Paquin; J Adams
Journal:  Curr Genet       Date:  1982-10       Impact factor: 3.886
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  52 in total

1.  Bulk segregation mapping of mutations in closely related strains of mice.

Authors:  Yu Xia; Sungyong Won; Xin Du; Pei Lin; Charles Ross; Diantha La Vine; Sean Wiltshire; Gabriel Leiva; Silvia M Vidal; Belinda Whittle; Christopher C Goodnow; James Koziol; Eva Marie Y Moresco; Bruce Beutler
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

2.  Discovery of mutations in Saccharomyces cerevisiae by pooled linkage analysis and whole-genome sequencing.

Authors:  Shanda R Birkeland; Natsuko Jin; Alev Cagla Ozdemir; Robert H Lyons; Lois S Weisman; Thomas E Wilson
Journal:  Genetics       Date:  2010-10-05       Impact factor: 4.562

3.  Bulk segregant analysis followed by high-throughput sequencing reveals the Neurospora cell cycle gene, ndc-1, to be allelic with the gene for ornithine decarboxylase, spe-1.

Authors:  Kyle R Pomraning; Kristina M Smith; Michael Freitag
Journal:  Eukaryot Cell       Date:  2011-04-22

4.  Oxidative stress survival in a clinical Saccharomyces cerevisiae isolate is influenced by a major quantitative trait nucleotide.

Authors:  Stephanie Diezmann; Fred S Dietrich
Journal:  Genetics       Date:  2011-04-21       Impact factor: 4.562

5.  Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Authors:  David Gresham; Bo Curry; Alexandra Ward; D Benjamin Gordon; Leonardo Brizuela; Leonid Kruglyak; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-08       Impact factor: 11.205

6.  Sequential elimination of major-effect contributors identifies additional quantitative trait loci conditioning high-temperature growth in yeast.

Authors:  Himanshu Sinha; Lior David; Renata C Pascon; Sandra Clauder-Münster; Sujatha Krishnakumar; Michelle Nguyen; Getao Shi; Jed Dean; Ronald W Davis; Peter J Oefner; John H McCusker; Lars M Steinmetz
Journal:  Genetics       Date:  2008-09-09       Impact factor: 4.562

7.  Influence of genotype and nutrition on survival and metabolism of starving yeast.

Authors:  Viktor M Boer; Sasan Amini; David Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  2008-05-02       Impact factor: 11.205

8.  Analysis of Polygenic Mutants Suggests a Role for Mediator in Regulating Transcriptional Activation Distance in Saccharomyces cerevisiae.

Authors:  Caitlin T Reavey; Mark J Hickman; Krista C Dobi; David Botstein; Fred Winston
Journal:  Genetics       Date:  2015-08-17       Impact factor: 4.562

9.  A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Authors:  Youko Horiuchi; Yoshiaki Harushima; Hironori Fujisawa; Takako Mochizuki; Masanori Kawakita; Takayuki Sakaguchi; Nori Kurata
Journal:  BMC Genomics       Date:  2010-05-20       Impact factor: 3.969

10.  Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae.

Authors:  Jared W Wenger; Katja Schwartz; Gavin Sherlock
Journal:  PLoS Genet       Date:  2010-05-13       Impact factor: 5.917
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