Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 Phylogenetic and physical analysis of the 5' leader RNA sequences of avian retroviruses.

Literature DB >> 1662367

Phylogenetic and physical analysis of the 5' leader RNA sequences of avian retroviruses.

P B Hackett¹, M W Dalton, D P Johnson, R B Petersen.

Abstract

A study of the secondary structures of the 5'-leader RNA sequences of avian leukosis/sarcoma viruses was conducted using phylogenetic sequence alignment, theoretical structures calculated from base-pairing interactions involving the calculated minimal delta G values, and RNaseT1 sensitivity. The results suggest that all of the avian retroviral RNA leaders may be able to adopt similar conformations. Open reading frames in the leader RNAs may be positioned to facilitate viral activities such as translation and packaging of the genomic RNA into virus particles.

Entities: Disease Species

Mesh：

Substances：

Year: 1991 PMID： 1662367 PMCID： PMC329330 DOI： 10.1093/nar/19.24.6929

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

38 in total

1. Methylmercury as a reversible denaturing agent for agarose gel electrophoresis.

Authors: J M Bailey; N Davidson
Journal: Anal Biochem Date: 1976-01 Impact factor: 3.365

Review 2. Regulation of expression of human immunodeficiency virus.

Authors: G N Pavlakis; B K Felber
Journal: New Biol Date: 1990-01

3. Effects of alterations in the leader sequence of Rous sarcoma virus RNA on initiation of translation.

Authors: C H Hensel; R B Petersen; P B Hackett
Journal: J Virol Date: 1989-11 Impact factor: 5.103

4. Partial nucleotide sequence of the avian erythroblastosis virus (AEV ES4).

Authors: P Thoraval; P Savatier; J H Xiao; F Mallet; J Samarut; G Verdier; V Nigon
Journal: Nucleic Acids Res Date: 1987-11-25 Impact factor: 16.971

5. Nucleotide sequence of HBI, a novel recombinant MC29 derivative with altered pathogenic properties.

Authors: D R Smith; B Vennstrom; M J Hayman; P J Enrietto
Journal: J Virol Date: 1985-12 Impact factor: 5.103

6. Role of the avian retrovirus mRNA leader in expression: evidence for novel translational control.

Authors: R A Katz; B R Cullen; R Malavarca; A M Skalka
Journal: Mol Cell Biol Date: 1986-02 Impact factor: 4.272

7. Control of Rous sarcoma virus RNA translation and packaging by the 5' and 3' untranslated sequences.

Authors: J L Darlix
Journal: J Mol Biol Date: 1986-06-05 Impact factor: 5.469

8. Synthesis in vitro of a seven amino acid peptide encoded in the leader RNA of Rous sarcoma virus.

Authors: P B Hackett; R B Petersen; C H Hensel; F Albericio; S I Gunderson; A C Palmenberg; G Barany
Journal: J Mol Biol Date: 1986-07-05 Impact factor: 5.469

9. Multiple upstream AUG codons mediate translational control of GCN4.

Authors: P P Mueller; A G Hinnebusch
Journal: Cell Date: 1986-04-25 Impact factor: 41.582

10. Translational control of synthesis of simian virus 40 late proteins from polycistronic 19S late mRNA.

Authors: C Dabrowski; J C Alwine
Journal: J Virol Date: 1988-09 Impact factor: 5.103

24 in total

1. An Mpsi-containing heterologous RNA, but not env mRNA, is efficiently packaged into avian retroviral particles.

Authors: J D Banks; B O Kealoha; M L Linial
Journal: J Virol Date: 1999-11 Impact factor: 5.103

2. Secondary structure analysis of a minimal avian leukosis-sarcoma virus packaging signal.

Authors: J D Banks; M L Linial
Journal: J Virol Date: 2000-01 Impact factor: 5.103

3. Human immunodeficiency virus types 1 and 2 differ in the predominant mechanism used for selection of genomic RNA for encapsidation.

Authors: J F Kaye; A M Lever
Journal: J Virol Date: 1999-04 Impact factor: 5.103

4. Rous sarcoma virus translation revisited: characterization of an internal ribosome entry segment in the 5' leader of the genomic RNA.

Authors: C Deffaud; J L Darlix
Journal: J Virol Date: 2000-12 Impact factor: 5.103

5. In vitro characterization of a base pairing interaction between the primer binding site and the minimal packaging signal of avian leukosis virus genomic RNA.

Authors: Igor Kanevsky; Natalya Vasilenko; Hélène Dumay-Odelot; Philippe Fossé
Journal: Nucleic Acids Res Date: 2003-12-15 Impact factor: 16.971

6. Multiple biological roles associated with the Rous sarcoma virus 5' untranslated RNA U5-IR stem and loop.

Authors: J T Miller; Z Ge; S Morris; K Das; J Leis
Journal: J Virol Date: 1997-10 Impact factor: 5.103

7. Alterations of the three short open reading frames in the Rous sarcoma virus leader RNA modulate viral replication and gene expression.

Authors: A Moustakas; T S Sonstegard; P B Hackett
Journal: J Virol Date: 1993-07 Impact factor: 5.103