Literature DB >> 16620090

Force-induced insulin dimer dissociation: a molecular dynamics study.

Taeho Kim1, Alexander Rhee, Christopher M Yip.   

Abstract

Understanding the forces and dynamics of insulin dissociation is critical for devising formulations for the treatment of insulin-dependent diabetes. In earlier work, we applied AFM-based force spectroscopy to covalently tethered and oriented insulin monomers to assess the effect of molecular orientation on insulin-insulin binding forces. We report here on steered molecular dynamics simulations of the insulin dissociation force spectroscopy experiment. Consistent with our experiments, our simulation results suggest that insulin dimer dissociation occurs near the limit of extensibility of the B-chain. We have also found that the forced dissociation of the insulin dimer is a rate-dependent process, involving significant conformational changes to the monomer(s). The insulin dimer dissociation pathway also depends on the relative strength of the inter-monomer interactions across the antiparallel beta-sheet interface and the intra-monomer interactions of residues A1 and A30 with the insulin B-chain. Our simulation results strongly support the design of bioactive insulin analogues that involves altering hydrogen bonding and hydrophobic interactions across the beta-sheet dimer interface.

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Year:  2006        PMID: 16620090     DOI: 10.1021/ja0607382

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Effects of ligand binding on the mechanical stability of protein GB1 studied by steered molecular dynamics simulation.

Authors:  Ji-Guo Su; Shu-Xin Zhao; Xiao-Feng Wang; Chun-Hua Li; Jing-Yuan Li
Journal:  J Mol Model       Date:  2016-07-22       Impact factor: 1.810

2.  The Hydration Shell of Monomeric and Dimeric Insulin Studied by Terahertz Time-Domain Spectroscopy.

Authors:  Pengfei Wang; Xiangchao Wang; Liyuan Liu; Hongwei Zhao; Wei Qi; Mingxia He
Journal:  Biophys J       Date:  2019-07-03       Impact factor: 4.033

3.  Noncovalent protein tetramers and pentamers with "n" charges yield monomers with n/4 and n/5 charges.

Authors:  Richard L Beardsley; Christopher M Jones; Asiri S Galhena; Vicki H Wysocki
Journal:  Anal Chem       Date:  2009-02-15       Impact factor: 6.986

4.  Elasticity and rupture of a multi-domain neural cell adhesion molecule complex.

Authors:  Venkat Maruthamuthu; Klaus Schulten; Deborah Leckband
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

5.  Using steered molecular dynamics simulations and single-molecule force spectroscopy to guide the rational design of biomimetic modular polymeric materials.

Authors:  Dora L Guzmán; Jason T Roland; Harindar Keer; Yen Peng Kong; Thorsten Ritz; Albert Yee; Zhibin Guan
Journal:  Polymer (Guildf)       Date:  2008-09-26       Impact factor: 4.430

6.  The Ca(2+) influence on calmodulin unfolding pathway: a steered molecular dynamics simulation study.

Authors:  Yong Zhang; Jizhong Lou
Journal:  PLoS One       Date:  2012-11-07       Impact factor: 3.240

7.  Disulfide bridges remain intact while native insulin converts into amyloid fibrils.

Authors:  Dmitry Kurouski; Jacqueline Washington; Mehmet Ozbil; Rajeev Prabhakar; Alexander Shekhtman; Igor K Lednev
Journal:  PLoS One       Date:  2012-06-01       Impact factor: 3.240

Review 8.  Theoretical and computational studies of peptides and receptors of the insulin family.

Authors:  Harish Vashisth
Journal:  Membranes (Basel)       Date:  2015-02-11

9.  Calculating the absolute binding free energy of the insulin dimer in an explicit solvent.

Authors:  Qiankun Gong; Haomiao Zhang; Haozhe Zhang; Changjun Chen
Journal:  RSC Adv       Date:  2020-01-03       Impact factor: 4.036

10.  When a foreign gene meets its native counterpart: computational biophysics analysis of two PgiC loci in the grass Festuca ovina.

Authors:  Yuan Li; Sandipan Mohanty; Daniel Nilsson; Bengt Hansson; Kangshan Mao; Anders Irbäck
Journal:  Sci Rep       Date:  2020-10-30       Impact factor: 4.379

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