Literature DB >> 16618936

Crystal structures of gamma-glutamyltranspeptidase from Escherichia coli, a key enzyme in glutathione metabolism, and its reaction intermediate.

Toshihiro Okada1, Hideyuki Suzuki, Kei Wada, Hidehiko Kumagai, Keiichi Fukuyama.   

Abstract

Gamma-glutamyltranspeptidase (GGT) is a heterodimic enzyme that is generated from the precursor protein through posttranslational processing and catalyzes the hydrolysis of gamma-glutamyl bonds in gamma-glutamyl compounds such as glutathione and/or the transfer of the gamma-glutamyl group to other amino acids and peptides. We have determined the crystal structure of GGT from Escherichia coli K-12 at 1.95 A resolution. GGT has a stacked alphabetabetaalpha fold comprising the large and small subunits, similar to the folds seen in members of the N-terminal nucleophile hydrolase superfamily. The active site Thr-391, the N-terminal residue of the small subunit, is located in the groove, from which the pocket for gamma-glutamyl moiety binding follows. We have further determined the structure of the gamma-glutamyl-enzyme intermediate trapped by flash cooling the GGT crystal soaked in glutathione solution and the structure of GGT in complex with l-glutamate. These structures revealed how the gamma-glutamyl moiety and l-glutamate are recognized by the enzyme. A water molecule was seen on the carbonyl carbon of the gamma-glutamyl-Thr-391 Ogamma bond in the intermediate that is to be hydrolyzed. Notably the residues essential for GGT activity (Arg-114, Asp-433, Ser-462, and Ser-463 in E. coli GGT) shown by site-directed mutagenesis of human GGT are all involved in the binding of the gamma-glutamyl moiety. The structure of E. coli GGT presented here, together with sequence alignment of GGTs, may be applicable to interpret the biochemical and genetic data of other GGTs.

Entities:  

Mesh:

Substances:

Year:  2006        PMID: 16618936      PMCID: PMC1458908          DOI: 10.1073/pnas.0511020103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Comparison of the size and physical properties of gamma-glutamyltranspeptidase purified from rat kidney following solubilization with papain or with Triton X-100.

Authors:  R P Hughey; N Curthoys
Journal:  J Biol Chem       Date:  1976-12-25       Impact factor: 5.157

2.  LAFIRE: software for automating the refinement process of protein-structure analysis.

Authors:  Min Yao; Yong Zhou; Isao Tanaka
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-01-18

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

5.  Identification of catalytic nucleophile of Escherichia coli gamma-glutamyltranspeptidase by gamma-monofluorophosphono derivative of glutamic acid: N-terminal thr-391 in small subunit is the nucleophile.

Authors:  M Inoue; J Hiratake; H Suzuki; H Kumagai; K Sakata
Journal:  Biochemistry       Date:  2000-07-04       Impact factor: 3.162

6.  Human gamma-glutamyl transpeptidase mutants involving conserved aspartate residues and the unique cysteine residue of the light subunit.

Authors:  Y Ikeda; J Fujii; N Taniguchi; A Meister
Journal:  J Biol Chem       Date:  1995-05-26       Impact factor: 5.157

7.  Extracellular glutathione is a source of cysteine for cells that express gamma-glutamyl transpeptidase.

Authors:  M H Hanigan; W A Ricketts
Journal:  Biochemistry       Date:  1993-06-22       Impact factor: 3.162

8.  Penicillin acylase has a single-amino-acid catalytic centre.

Authors:  H J Duggleby; S P Tolley; C P Hill; E J Dodson; G Dodson; P C Moody
Journal:  Nature       Date:  1995-01-19       Impact factor: 49.962

9.  Effect of site-directed mutations on processing and activity of gamma-glutamyltranspeptidase of Escherichia coli K-12.

Authors:  W Hashimoto; H Suzuki; K Yamamoto; H Kumagai
Journal:  J Biochem       Date:  1995-07       Impact factor: 3.387

10.  Involvement of Ser-451 and Ser-452 in the catalysis of human gamma-glutamyl transpeptidase.

Authors:  Y Ikeda; J Fujii; M E Anderson; N Taniguchi; A Meister
Journal:  J Biol Chem       Date:  1995-09-22       Impact factor: 5.157

View more
  47 in total

1.  Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis.

Authors:  Seiji Negoro; Naoki Shibata; Yusuke Tanaka; Kengo Yasuhira; Hiroshi Shibata; Haruka Hashimoto; Young-Ho Lee; Shohei Oshima; Ryuji Santa; Shohei Oshima; Kozo Mochiji; Yuji Goto; Takahisa Ikegami; Keisuke Nagai; Dai-Ichiro Kato; Masahiro Takeo; Yoshiki Higuchi
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

Review 2.  γ-Glutamyltranspeptidases: sequence, structure, biochemical properties, and biotechnological applications.

Authors:  Immacolata Castellano; Antonello Merlino
Journal:  Cell Mol Life Sci       Date:  2012-04-21       Impact factor: 9.261

3.  Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Authors:  Hongbo Xie; Slobodan Vucetic; Lilia M Iakoucheva; Christopher J Oldfield; A Keith Dunker; Zoran Obradovic; Vladimir N Uversky
Journal:  J Proteome Res       Date:  2007-03-29       Impact factor: 4.466

4.  Statistical optimization of culture conditions of mesophillic gamma-glutamyl transpeptidase from Bacillus altitudinis IHB B1644.

Authors:  Eshita Sharma; Arvind Gulati; Ashu Gulati
Journal:  3 Biotech       Date:  2020-05-20       Impact factor: 2.406

5.  Gene cloning and protein expression of γ-glutamyltranspeptidases from Thermus thermophilus and Deinococcus radiodurans: comparison of molecular and structural properties with mesophilic counterparts.

Authors:  Immacolata Castellano; Anna Di Salle; Antonello Merlino; Mosè Rossi; Francesco La Cara
Journal:  Extremophiles       Date:  2011-02-05       Impact factor: 2.395

6.  Analysis of site-specific glycosylation of renal and hepatic γ-glutamyl transpeptidase from normal human tissue.

Authors:  Matthew B West; Zaneer M Segu; Christa L Feasley; Pilsoo Kang; Iveta Klouckova; Chenglong Li; Milos V Novotny; Christopher M West; Yehia Mechref; Marie H Hanigan
Journal:  J Biol Chem       Date:  2010-07-09       Impact factor: 5.157

7.  Novel insights into eukaryotic γ-glutamyltranspeptidase 1 from the crystal structure of the glutamate-bound human enzyme.

Authors:  Matthew B West; Yunyu Chen; Stephanie Wickham; Ann Heroux; Kyle Cahill; Marie H Hanigan; Blaine H M Mooers
Journal:  J Biol Chem       Date:  2013-09-18       Impact factor: 5.157

8.  Clades of γ-glutamyltransferases (GGTs) in the ascomycota and heterologous expression of Colletotrichum graminicola CgGGT1, a member of the pezizomycotina-only GGT clade.

Authors:  Marco H Bello; Lynn Epstein
Journal:  J Microbiol       Date:  2013-03-02       Impact factor: 3.422

9.  The quorum-quenching N-acyl homoserine lactone acylase PvdQ is an Ntn-hydrolase with an unusual substrate-binding pocket.

Authors:  Marcel Bokhove; Pol Nadal Jimenez; Wim J Quax; Bauke W Dijkstra
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-22       Impact factor: 11.205

10.  The human gamma-glutamyltransferase gene family.

Authors:  Nora Heisterkamp; John Groffen; David Warburton; Tam P Sneddon
Journal:  Hum Genet       Date:  2008-03-21       Impact factor: 4.132

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.