Literature DB >> 16610794

Structure-based optimization of azole antifungal agents by CoMFA, CoMSIA, and molecular docking.

Chunquan Sheng1, Wannian Zhang, Haitao Ji, Min Zhang, Yunlong Song, Hui Xu, Jie Zhu, Zhenyuan Miao, Qingfen Jiang, Jianzhong Yao, Youjun Zhou, Jü Zhu, Jiaguo Lü.   

Abstract

In a continuing effort to develop highly potent azole antifungal agents, the three-dimensional quantitative structure-activity relationship methods, CoMFA and CoMSIA, were applied using a set of novel azole antifungal compounds. The binding mode of the compounds at the active site of lanosterol 14alpha-demethylase was further explored using the flexible docking method. Various hydrophobic, van der Waals, pi-pi stacking, and hydrogen bonding interactions were observed between the azoles and the enzyme. Based on results from the molecular modeling, a receptor-based pharmacophore model was established to guide the rational optimization of the azole antifungal agents. Thus, a total of 57 novel azoles were designed and synthesized by a three-step optimization process. In vitro antifungal assay revealed that the antifungal activities of these novel azoles were greatly improved, which confirmed the reliability of the model from molecular modeling.

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Year:  2006        PMID: 16610794     DOI: 10.1021/jm051211n

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  18 in total

Review 1.  Evaluation of the performance of 3D virtual screening protocols: RMSD comparisons, enrichment assessments, and decoy selection--what can we learn from earlier mistakes?

Authors:  Johannes Kirchmair; Patrick Markt; Simona Distinto; Gerhard Wolber; Thierry Langer
Journal:  J Comput Aided Mol Des       Date:  2008-01-15       Impact factor: 3.686

2.  Three-dimensional model of lanosterol 14 alpha-demethylase from Cryptococcus neoformans: active-site characterization and insights into azole binding.

Authors:  Chunquan Sheng; Zhenyuan Miao; Haitao Ji; Jianzhong Yao; Wenya Wang; Xiaoying Che; Guoqiang Dong; Jiaguo Lü; Wei Guo; Wannian Zhang
Journal:  Antimicrob Agents Chemother       Date:  2009-05-26       Impact factor: 5.191

3.  X-ray structure of 4,4'-dihydroxybenzophenone mimicking sterol substrate in the active site of sterol 14alpha-demethylase (CYP51).

Authors:  Ali Nasser Eddine; Jens P von Kries; Mikhail V Podust; Thulasi Warrier; Stefan H E Kaufmann; Larissa M Podust
Journal:  J Biol Chem       Date:  2008-03-26       Impact factor: 5.157

4.  Evolutionary trace analysis of CYP51 family: implication for site-directed mutagenesis and novel antifungal drug design.

Authors:  Chunquan Sheng; Shuanghong Chen; Haitao Ji; Guoqiang Dong; Xiaoyin Che; Wenya Wang; Zhenyuan Miao; Jianzhong Yao; Jiaguo Lü; Wei Guo; Wannian Zhang
Journal:  J Mol Model       Date:  2009-07-11       Impact factor: 1.810

5.  A combined 3D-QSAR and molecular docking strategy to understand the binding mechanism of (V600E)B-RAF inhibitors.

Authors:  Zaheer Ul-Haq; Uzma Mahmood; Sauleha Reza
Journal:  Mol Divers       Date:  2012-10-04       Impact factor: 2.943

Review 6.  Software and resources for computational medicinal chemistry.

Authors:  Chenzhong Liao; Markus Sitzmann; Angelo Pugliese; Marc C Nicklaus
Journal:  Future Med Chem       Date:  2011-06       Impact factor: 3.808

7.  Novel carboline derivatives as potent antifungal lead compounds: design, synthesis, and biological evaluation.

Authors:  Shengzheng Wang; Yan Wang; Wei Liu; Na Liu; Yongqiang Zhang; Guoqiang Dong; Yang Liu; Zhengang Li; Xiaomeng He; Zhenyuan Miao; Jianzhong Yao; Jian Li; Wannian Zhang; Chunquan Sheng
Journal:  ACS Med Chem Lett       Date:  2014-02-13       Impact factor: 4.345

8.  Impact of Absolute Stereochemistry on the Antiangiogenic and Antifungal Activities of Itraconazole.

Authors:  Wei Shi; Benjamin A Nacev; Shridhar Bhat; Jun O Liu
Journal:  ACS Med Chem Lett       Date:  2010       Impact factor: 4.345

9.  Novel α-Aminophosphonates and α-Aminophosphonic Acids: Synthesis, Molecular Docking and Evaluation of Antifungal Activity against Scedosporium Species.

Authors:  Anthonny Cordero-Díaz; Efren Robledo-Leal; Eugenio Hernández-Fernández; Emanuel Hernández-Núñez; Mariana Elizondo-Zertuche; Susana T López-Cortina
Journal:  Molecules       Date:  2022-06-17       Impact factor: 4.927

10.  2-Amino-nonyl-6-methoxyl-tetralin muriate inhibits sterol C-14 reductase in the ergosterol biosynthetic pathway.

Authors:  Rong-mei Liang; Yong-bing Cao; Kai-hua Fan; Yi Xu; Ping-hui Gao; You-jun Zhou; Bao-di Dai; Yong-hong Tan; Shi-hua Wang; Hui Tang; Hong-tao Liu; Yuan-ying Jiang
Journal:  Acta Pharmacol Sin       Date:  2009-11-16       Impact factor: 6.150

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