Literature DB >> 16605560

Connectivity and expression in protein networks: proteins in a complex are uniformly expressed.

Shai Carmi1, Erez Y Levanon, Shlomo Havlin, Eli Eisenberg.   

Abstract

We explore the interplay between the protein-protein interactions network and the expression of the interacting proteins. It is shown that interacting proteins are expressed in significantly more similar cellular concentrations. This is largely due to interacting pairs which are part of protein complexes. We solve a generic model of complex formation and show explicitly that complexes form most efficiently when their members have roughly the same concentrations. Therefore, the observed similarity in interacting protein concentrations could be attributed to optimization for efficiency of complex formation.

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Year:  2006        PMID: 16605560     DOI: 10.1103/PhysRevE.73.031909

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  A Novel Systems-Biology Algorithm for the Analysis of Coordinated Protein Responses Using Quantitative Proteomics.

Authors:  Fernando García-Marqués; Marco Trevisan-Herraz; Sara Martínez-Martínez; Emilio Camafeita; Inmaculada Jorge; Juan Antonio Lopez; Nerea Méndez-Barbero; Simón Méndez-Ferrer; Miguel Angel Del Pozo; Borja Ibáñez; Vicente Andrés; Francisco Sánchez-Madrid; Juan Miguel Redondo; Elena Bonzon-Kulichenko; Jesús Vázquez
Journal:  Mol Cell Proteomics       Date:  2016-02-18       Impact factor: 5.911

2.  Stability of climate networks with time.

Authors:  Y Berezin; A Gozolchiani; O Guez; S Havlin
Journal:  Sci Rep       Date:  2012-09-18       Impact factor: 4.379

3.  Transcription of functionally related constitutive genes is not coordinated.

Authors:  Saumil J Gandhi; Daniel Zenklusen; Timothée Lionnet; Robert H Singer
Journal:  Nat Struct Mol Biol       Date:  2010-12-05       Impact factor: 15.369

4.  Global organization of protein complexome in the yeast Saccharomyces cerevisiae.

Authors:  Sang Hoon Lee; Pan-Jun Kim; Hawoong Jeong
Journal:  BMC Syst Biol       Date:  2011-08-15

5.  Selection for translation efficiency on synonymous polymorphisms in recent human evolution.

Authors:  Yedael Y Waldman; Tamir Tuller; Alon Keinan; Eytan Ruppin
Journal:  Genome Biol Evol       Date:  2011-07-29       Impact factor: 3.416

6.  Efficiency of complex production in changing environment.

Authors:  Shai Carmi; Erez Y Levanon; Eli Eisenberg
Journal:  BMC Syst Biol       Date:  2009-01-07
  6 in total

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