Literature DB >> 16605409

Properties of attractors of canalyzing random Boolean networks.

U Paul1, V Kaufman, B Drossel.   

Abstract

We study critical random Boolean networks with two inputs per node that contain only canalyzing functions. We present a phenomenological theory that explains how a frozen core of nodes that are frozen on all attractors arises. This theory leads to an intuitive understanding of the system's dynamics as it demonstrates the analogy between standard random Boolean networks and networks with canalyzing functions only. It reproduces correctly the scaling of the number of nonfrozen nodes with system size. We then investigate numerically attractor lengths and numbers, and explain the findings in terms of the properties of relevant components. In particular we show that canalyzing networks can contain very long attractors, albeit they occur less often than in standard networks.

Year:  2006        PMID: 16605409     DOI: 10.1103/PhysRevE.73.026118

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

1.  Most networks in Wagner's model are cycling.

Authors:  Ricardo Pinho; Elhanan Borenstein; Marcus W Feldman
Journal:  PLoS One       Date:  2012-04-12       Impact factor: 3.240

2.  Dynamics of random Boolean networks under fully asynchronous stochastic update based on linear representation.

Authors:  Chao Luo; Xingyuan Wang
Journal:  PLoS One       Date:  2013-06-13       Impact factor: 3.240

3.  Current approaches to gene regulatory network modelling.

Authors:  Thomas Schlitt; Alvis Brazma
Journal:  BMC Bioinformatics       Date:  2007-09-27       Impact factor: 3.169

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.