Literature DB >> 16592297

Transition dipole coupling in Amide I modes of betapolypeptides.

W H Moore1, S Krimm.   

Abstract

Our previous introduction of transition dipole coupling helped to explain the splittings in the Amide I modes of antiparallel chain pleated sheet polyglycine I. This mechanism has now been applied to the more likely rippled sheet structure of this polypeptide as well as to the pleated sheet structure of poly(L-alanine). A satisfactorily consistent explanation of the splittings in both polypeptides is obtained. Since a previously incorporated interaction constant has not been used in the present treatment, these results show that transition dipole coupling alone can provide the physical basis for understanding these splittings. It is therefore now possible to predict with confidence the hitherto unidentified v(pi,pi) frequency of the antiparallel chain pleated sheet as well as the characteristic frequencies of the parallel chain pleated sheet.

Entities:  

Year:  1975        PMID: 16592297      PMCID: PMC388847          DOI: 10.1073/pnas.72.12.4933

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  9 in total

1.  Infrared spectra and chain conformation of proteins.

Authors:  S KRIMM
Journal:  J Mol Biol       Date:  1962-06       Impact factor: 5.469

2.  Configurations of Polypeptide Chains With Favored Orientations Around Single Bonds: Two New Pleated Sheets.

Authors:  L Pauling; R B Corey
Journal:  Proc Natl Acad Sci U S A       Date:  1951-11       Impact factor: 11.205

3.  Structure of polyglycine I: a comparison of the antiparallel pleated and antiparallel rippled sheets.

Authors:  F Colonna-Cesari; S Premilat; B Lotz
Journal:  J Mol Biol       Date:  1974-08-05       Impact factor: 5.469

4.  Crystal structure of polyglycine I.

Authors:  B Lotz
Journal:  J Mol Biol       Date:  1974-08-05       Impact factor: 5.469

5.  Laser-excited Raman spectroscopy of biomolecules. VI. Some polypeptides as conformational models.

Authors:  M C Chen; R C Lord
Journal:  J Am Chem Soc       Date:  1974-07-24       Impact factor: 15.419

6.  [Resonance interactions of basic amide oscillations in ordered peptide structures].

Authors:  Iu N Chirgadze; N A Nevskaia
Journal:  Dokl Akad Nauk SSSR       Date:  1973-01-11

7.  Normal vibrations of crystalline polyglycine I.

Authors:  Y Abe; S Krimm
Journal:  Biopolymers       Date:  1972       Impact factor: 2.505

8.  Structure of beta-poly-L-alanine: refined atomic co-ordinates for an anti-parallel beta-pleated sheet.

Authors:  S Arnott; S D Dover; A Elliott
Journal:  J Mol Biol       Date:  1967-11-28       Impact factor: 5.469

9.  Intermolecular interaction effects in the amide I vibrations of polypeptides.

Authors:  S Krimm; Y Abe
Journal:  Proc Natl Acad Sci U S A       Date:  1972-10       Impact factor: 11.205

  9 in total
  13 in total

1.  Stable and metastable states of human amylin in solution.

Authors:  Allam S Reddy; Lu Wang; Sadanand Singh; Yun L Ling; Lauren Buchanan; Martin T Zanni; James L Skinner; Juan J de Pablo
Journal:  Biophys J       Date:  2010-10-06       Impact factor: 4.033

Review 2.  Vibrational Spectroscopic Map, Vibrational Spectroscopy, and Intermolecular Interaction.

Authors:  Carlos R Baiz; Bartosz Błasiak; Jens Bredenbeck; Minhaeng Cho; Jun-Ho Choi; Steven A Corcelli; Arend G Dijkstra; Chi-Jui Feng; Sean Garrett-Roe; Nien-Hui Ge; Magnus W D Hanson-Heine; Jonathan D Hirst; Thomas L C Jansen; Kijeong Kwac; Kevin J Kubarych; Casey H Londergan; Hiroaki Maekawa; Mike Reppert; Shinji Saito; Santanu Roy; James L Skinner; Gerhard Stock; John E Straub; Megan C Thielges; Keisuke Tominaga; Andrei Tokmakoff; Hajime Torii; Lu Wang; Lauren J Webb; Martin T Zanni
Journal:  Chem Rev       Date:  2020-06-29       Impact factor: 60.622

3.  Vibrational coupling, isotopic editing, and beta-sheet structure in a membrane-bound polypeptide.

Authors:  Cynthia Paul; Jianping Wang; William C Wimley; Robin M Hochstrasser; Paul H Axelsen
Journal:  J Am Chem Soc       Date:  2004-05-12       Impact factor: 15.419

4.  Understanding the key factors that control the rate of beta-hairpin folding.

Authors:  Deguo Du; Yongjin Zhu; Cheng-Yen Huang; Feng Gai
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

5.  Detection of chiral sum frequency generation vibrational spectra of proteins and peptides at interfaces in situ.

Authors:  Jie Wang; Xiaoyun Chen; Matthew L Clarke; Zhan Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-25       Impact factor: 11.205

6.  Vibrational analysis of peptides, polypeptides, and proteins: Characteristic amide bands of beta-turns.

Authors:  J Bandekar; S Krimm
Journal:  Proc Natl Acad Sci U S A       Date:  1979-02       Impact factor: 11.205

7.  Electrostatic interactions in phospholipid membranes revealed by coherent 2D IR spectroscopy.

Authors:  V V Volkov; R Chelli; W Zhuang; F Nuti; Y Takaoka; A M Papini; S Mukamel; R Righini
Journal:  Proc Natl Acad Sci U S A       Date:  2007-09-19       Impact factor: 11.205

8.  Vibrational analysis of the structure of gramicidin A. I. Normal mode analysis.

Authors:  V M Naik; S Krimm
Journal:  Biophys J       Date:  1986-06       Impact factor: 4.033

9.  Assessment of amide I spectroscopic maps for a gas-phase peptide using IR-UV double-resonance spectroscopy and density functional theory calculations.

Authors:  J K Carr; A V Zabuga; S Roy; T R Rizzo; J L Skinner
Journal:  J Chem Phys       Date:  2014-06-14       Impact factor: 3.488

10.  Modeling the vibrational couplings of nucleobases.

Authors:  Yaoyukun Jiang; Lu Wang
Journal:  J Chem Phys       Date:  2020-02-28       Impact factor: 3.488

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