Literature DB >> 16584131

Recent progress in the computational prediction of aqueous solubility and absorption.

Stephen R Johnson1, Weifan Zheng.   

Abstract

The computational prediction of aqueous solubility and/or human absorption has been the goal of many researchers in recent years. Such an in silico counterpart to the biopharmaceutical classification system (BCS) would have great utility. This review focuses on recent developments in the computational prediction of aqueous solubility, P-glycoprotein transport, and passive absorption. We find that, while great progress has been achieved, models that can reliably affect chemistry and development are still lacking. We briefly discuss aspects of emerging scientific understanding that may lead to breakthroughs in the computational modeling of these properties.

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Year:  2006        PMID: 16584131      PMCID: PMC2751421          DOI: 10.1208/aapsj080104

Source DB:  PubMed          Journal:  AAPS J        ISSN: 1550-7416            Impact factor:   4.009


  91 in total

1.  Correlation of aqueous solubility of salts of benzylamine with experimentally and theoretically derived parameters. A multivariate data analysis approach.

Authors:  Henrik Parshad; Karla Frydenvang; Tommy Liljefors; Claus Selch Larsen
Journal:  Int J Pharm       Date:  2002-04-26       Impact factor: 5.875

2.  Characteristic physical properties and structural fragments of marketed oral drugs.

Authors:  Michal Vieth; Miles G Siegel; Richard E Higgs; Ian A Watson; Daniel H Robertson; Kenneth A Savin; Gregory L Durst; Philip A Hipskind
Journal:  J Med Chem       Date:  2004-01-01       Impact factor: 7.446

3.  Solubility prediction by recursive partitioning.

Authors:  Xiaoyang Xia; Edward Maliski; Janet Cheetham; Leszek Poppe
Journal:  Pharm Res       Date:  2003-10       Impact factor: 4.200

4.  A consensus neural network-based technique for discriminating soluble and poorly soluble compounds.

Authors:  David T Manallack; Benjamin G Tehan; Emanuela Gancia; Brian D Hudson; Martyn G Ford; David J Livingstone; David C Whitley; Will R Pitt
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

5.  Estimation of aqueous solubility of organic compounds by using the general solubility equation.

Authors:  Yingqing Ran; Yan He; Gang Yang; Jennifer L H Johnson; Samuel H Yalkowsky
Journal:  Chemosphere       Date:  2002-08       Impact factor: 7.086

6.  Prediction of P-glycoprotein substrates by a support vector machine approach.

Authors:  Y Xue; C W Yap; L Z Sun; Z W Cao; J F Wang; Y Z Chen
Journal:  J Chem Inf Comput Sci       Date:  2004 Jul-Aug

7.  A pharmacophore hypothesis for P-glycoprotein substrate recognition using GRIND-based 3D-QSAR.

Authors:  Giovanni Cianchetta; Robert W Singleton; Meng Zhang; Marianne Wildgoose; Dennis Giesing; Arnaldo Fravolini; Gabriele Cruciani; Roy J Vaz
Journal:  J Med Chem       Date:  2005-04-21       Impact factor: 7.446

8.  Prediction of oral drug absorption in humans by theoretical passive absorption model.

Authors:  Kouki Obata; Kiyohiko Sugano; Ryoichi Saitoh; Atsuko Higashida; Yoshiaki Nabuchi; Minoru Machida; Yosinori Aso
Journal:  Int J Pharm       Date:  2005-04-11       Impact factor: 5.875

9.  Classification of substrates and inhibitors of P-glycoprotein using unsupervised machine learning approach.

Authors:  Yong-Hua Wang; Yan Li; Sheng-Li Yang; Ling Yang
Journal:  J Chem Inf Model       Date:  2005 May-Jun       Impact factor: 4.956

10.  A physiological model for the estimation of the fraction dose absorbed in humans.

Authors:  Stefan Willmann; Walter Schmitt; Jörg Keldenich; Jörg Lippert; Jennifer B Dressman
Journal:  J Med Chem       Date:  2004-07-29       Impact factor: 7.446

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  10 in total

1.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-12-01       Impact factor: 3.686

2.  Estimating the domain of applicability for machine learning QSAR models: a study on aqueous solubility of drug discovery molecules.

Authors:  Timon Sebastian Schroeter; Anton Schwaighofer; Sebastian Mika; Antonius Ter Laak; Detlev Suelzle; Ursula Ganzer; Nikolaus Heinrich; Klaus-Robert Müller
Journal:  J Comput Aided Mol Des       Date:  2007-07-14       Impact factor: 3.686

3.  Computational analysis of structure-based interactions and ligand properties can predict efflux effects on antibiotics.

Authors:  Aurijit Sarkar; Kelcey C Anderson; Glen E Kellogg
Journal:  Eur J Med Chem       Date:  2012-03-12       Impact factor: 6.514

4.  Computational prediction of drug solubility in lipid based formulation excipients.

Authors:  Linda C Persson; Christopher J H Porter; William N Charman; Christel A S Bergström
Journal:  Pharm Res       Date:  2013-06-15       Impact factor: 4.200

5.  Three-class classification models of logS and logP derived by using GA-CG-SVM approach.

Authors:  Hui Zhang; Ming-Li Xiang; Chang-Ying Ma; Qi Huang; Wei Li; Yang Xie; Yu-Quan Wei; Sheng-Yong Yang
Journal:  Mol Divers       Date:  2009-01-31       Impact factor: 3.364

6.  Binary classification of aqueous solubility using support vector machines with reduction and recombination feature selection.

Authors:  Tiejun Cheng; Qingliang Li; Yanli Wang; Stephen H Bryant
Journal:  J Chem Inf Model       Date:  2011-01-07       Impact factor: 4.956

7.  A prediction model for oral bioavailability of drugs using physicochemical properties by support vector machine.

Authors:  Rajnish Kumar; Anju Sharma; Pritish Kumar Varadwaj
Journal:  J Nat Sci Biol Med       Date:  2011-07

Review 8.  Computational prediction of drug solubility in water-based systems: Qualitative and quantitative approaches used in the current drug discovery and development setting.

Authors:  Christel A S Bergström; Per Larsson
Journal:  Int J Pharm       Date:  2018-02-06       Impact factor: 5.875

Review 9.  Mechanistic Understanding From Molecular Dynamics Simulation in Pharmaceutical Research 1: Drug Delivery.

Authors:  Alex Bunker; Tomasz Róg
Journal:  Front Mol Biosci       Date:  2020-11-25

Review 10.  QSPR studies on aqueous solubilities of drug-like compounds.

Authors:  Pablo R Duchowicz; Eduardo A Castro
Journal:  Int J Mol Sci       Date:  2009-06-03       Impact factor: 6.208

  10 in total

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