Literature DB >> 16582477

Structure of the manganese superoxide dismutase from Deinococcus radiodurans in two crystal forms.

Rebecca J Dennis1, Elena Micossi, Joanne McCarthy, Elin Moe, Elspeth J Gordon, Sigrid Kozielski-Stuhrmann, Gordon A Leonard, Sean McSweeney.   

Abstract

The structure of the manganese superoxide dismutase (Mn-SOD; DR1279) from Deinococcus radiodurans has been determined in two different crystal forms. Both crystal forms are monoclinic with space group P2(1). Form I has unit-cell parameters a = 44.28, b = 83.21, c = 59.52 angstroms, beta = 110.18 degrees and contains a homodimer in the asymmetric unit, with structure refinement (R = 16.8%, R(free) = 23.6%) carried out using data to d(min) = 2.2 angstroms. Form II has unit-cell parameters a = 43.57, b = 87.10, c = 116.42 angstroms, beta = 92.1 degrees and an asymmetric unit containing two Mn-SOD homodimers; structure refinement was effected to a resolution of 2.0 angstroms (R = 17.2%, R(free) = 22.3%). The resulting structures are compared with that of Mn-SOD from Escherichia coli, with which they are shown to be essentially isostructural.

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Year:  2006        PMID: 16582477      PMCID: PMC2222570          DOI: 10.1107/S1744309106008402

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags.

Authors:  Mary S Lipton; Ljiljana Pasa-Tolic'; Gordon A Anderson; David J Anderson; Deanna L Auberry; John R Battista; Michael J Daly; Jim Fredrickson; Kim K Hixson; Heather Kostandarithes; Christophe Masselon; Lye Meng Markillie; Ronald J Moore; Margaret F Romine; Yufeng Shen; Eric Stritmatter; Nikola Tolic'; Harold R Udseth; Amudhan Venkateswaran; Kwong-Kwok Wong; Rui Zhao; Richard D Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-12       Impact factor: 11.205

2.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

3.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

4.  Cryo-trapping the six-coordinate, distorted-octahedral active site of manganese superoxide dismutase.

Authors:  G E Borgstahl; M Pokross; R Chehab; A Sekher; E H Snell
Journal:  J Mol Biol       Date:  2000-03-03       Impact factor: 5.469

5.  Iron- and manganese-containing superoxide dismutases can be distinguished by analysis of their primary structures.

Authors:  M W Parker; C C Blake
Journal:  FEBS Lett       Date:  1988-03-14       Impact factor: 4.124

6.  Removing a hydrogen bond in the dimer interface of Escherichia coli manganese superoxide dismutase alters structure and reactivity.

Authors:  R A Edwards; M M Whittaker; J W Whittaker; E N Baker; G B Jameson
Journal:  Biochemistry       Date:  2001-04-17       Impact factor: 3.162

Review 7.  Biological effects of the superoxide radical.

Authors:  I Fridovich
Journal:  Arch Biochem Biophys       Date:  1986-05-15       Impact factor: 4.013

8.  The manganese superoxide dismutase of Escherichia coli K-12 associates with DNA.

Authors:  H M Steinman; L Weinstein; M Brenowitz
Journal:  J Biol Chem       Date:  1994-11-18       Impact factor: 5.157

9.  Functional differences between manganese and iron superoxide dismutases in Escherichia coli K-12.

Authors:  K A Hopkin; M A Papazian; H M Steinman
Journal:  J Biol Chem       Date:  1992-12-05       Impact factor: 5.157

10.  Ringlike structure of the Deinococcus radiodurans genome: a key to radioresistance?

Authors:  Smadar Levin-Zaidman; Joseph Englander; Eyal Shimoni; Ajay K Sharma; Kenneth W Minton; Abraham Minsky
Journal:  Science       Date:  2003-01-10       Impact factor: 47.728

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  5 in total

1.  The first crystal structure of manganese superoxide dismutase from the genus Staphylococcus.

Authors:  Debbie S Retnoningrum; Hiromi Yoshida; Sekar Arumsari; Shigehiro Kamitori; Wangsa T Ismaya
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-02-26       Impact factor: 1.056

2.  Thioredoxin system from Deinococcus radiodurans.

Authors:  Josiah Obiero; Vanessa Pittet; Sara A Bonderoff; David A R Sanders
Journal:  J Bacteriol       Date:  2009-11-20       Impact factor: 3.490

Review 3.  Conservation and diversity of radiation and oxidative stress resistance mechanisms in Deinococcus species.

Authors:  Sangyong Lim; Jong-Hyun Jung; Laurence Blanchard; Arjan de Groot
Journal:  FEMS Microbiol Rev       Date:  2019-01-01       Impact factor: 16.408

4.  Structural and Functional Characterization of the Holliday Junction Resolvase RuvC from Deinococcus radiodurans.

Authors:  Chen Qin; Wanchun Han; Ying Xu; Ye Zhao; Hong Xu; Bing Tian; Liangyan Wang; Yuejin Hua
Journal:  Microorganisms       Date:  2022-06-06

5.  Purification, crystallization and X-ray structures of the two manganese superoxide dismutases from Caenorhabditis elegans.

Authors:  Chi H Trinh; Thérèse Hunter; Emma E Stewart; Simon E V Phillips; Gary J Hunter
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-11-28
  5 in total

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