Literature DB >> 16582092

Application of stable isotopes and mass isotopomer distribution analysis to the study of intermediary metabolism of nutrients.

B J Bequette1, N E Sunny, S W El-Kadi, S L Owens.   

Abstract

Genomic investigations in animals have begun to reveal the metabolic and physiological functions of genes and protein products. However, a thorough understanding of the genomic roadmaps will require investigative approaches that yield qualitative and quantitative information on the activities, fluxes, and connectivity of pathways involved in nutrient use in farm animals; that is, the metabolic phenotype. Recently, the commercial availability of stable isotope (13C, 15N, 2H)-labeled compounds and highly accurate mass spectrometers has made it possible to probe the details of metabolic pathways involved in macronutrient use. For years, the biological sciences have exploited uniformly 13C-labeled substrates (e.g., glucose, amino acids, nucleic acids) and 13C-mass isotopomer distribution (MID) in their metabolic investigations, whereas their use in the animal sciences is very limited. When [U-13C] substrates are fed, infused, or added to cell incubations, the 13C-skeletons distribute throughout metabolic networks. 13C-Mass isotopomer distribution in intermediates and end products of the pathways provides a signature of the fluxes and activities of pathway enzymes traveled by the precursor molecule. This paper highlights aspects of animal nutrition and metabolism in which [U-13C] substrates and MID can be applied to investigations of amino acid, carbohydrate, and fat metabolism. We will focus on [U-13C] glucose as a tracer in chickens, fish, sheep, and cell cultures to investigate the interconnectivity of the pathways of macronutrient and nucleic acid metabolism, and provide demonstration of the central position of the Krebs cycle in preserving metabolic flexibility via anaplerotic and cataplerotic sequences. Exploitation of this approach in animal sciences offers endless opportunities to provide missing details of the biochemical networks of nutrient use that may prove to be strictly under genomic control.

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Year:  2006        PMID: 16582092     DOI: 10.2527/2006.8413_supple50x

Source DB:  PubMed          Journal:  J Anim Sci        ISSN: 0021-8812            Impact factor:   3.159


  16 in total

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2.  Altered glucose metabolism in Harvey-ras transformed MCF10A cells.

Authors:  Wei Zheng; Fariba Tayyari; G A Nagana Gowda; Daniel Raftery; Eric S McLamore; D Marshall Porterfield; Shawn S Donkin; Brian Bequette; Dorothy Teegarden
Journal:  Mol Carcinog       Date:  2013-09-02       Impact factor: 4.784

3.  Novel quantitative insights into carbon sources for synthesis of poly hydroxybutyrate in Synechocystis PCC 6803.

Authors:  Vaishali Dutt; Shireesh Srivastava
Journal:  Photosynth Res       Date:  2017-11-09       Impact factor: 3.573

4.  Metabolic tracing analysis reveals substrate-specific metabolic deficits in platelet storage lesion.

Authors:  Carrie Sims; Noelle Salliant; Andrew J Worth; Robert Parry; Clementina Mesaros; Ian A Blair; Nathaniel W Snyder
Journal:  Transfusion       Date:  2017-08-23       Impact factor: 3.157

5.  Roux-en-Y gastric bypass compared with equivalent diet restriction: Mechanistic insights into diabetes remission.

Authors:  Laurentiu M Pop; Andrea Mari; Tong-Jin Zhao; Lori Mitchell; Shawn Burgess; Xilong Li; Beverley Adams-Huet; Ildiko Lingvay
Journal:  Diabetes Obes Metab       Date:  2018-04-10       Impact factor: 6.577

6.  Isotopomer enrichment assay for very short chain fatty acids and its metabolic applications.

Authors:  Kristyen Tomcik; Rafael A Ibarra; Sushabhan Sadhukhan; Yong Han; Gregory P Tochtrop; Guo-Fang Zhang
Journal:  Anal Biochem       Date:  2010-11-26       Impact factor: 3.365

7.  1,25-dihydroxyvitamin D regulation of glucose metabolism in Harvey-ras transformed MCF10A human breast epithelial cells.

Authors:  Wei Zheng; Fariba Tayyari; G A Nagana Gowda; Daniel Raftery; Eric S McLamore; Jin Shi; D Marshall Porterfield; Shawn S Donkin; Brian Bequette; Dorothy Teegarden
Journal:  J Steroid Biochem Mol Biol       Date:  2013-04-22       Impact factor: 4.292

8.  Integrated, Step-Wise, Mass-Isotopomeric Flux Analysis of the TCA Cycle.

Authors:  Tiago C Alves; Rebecca L Pongratz; Xiaojian Zhao; Orlando Yarborough; Sam Sereda; Orian Shirihai; Gary W Cline; Graeme Mason; Richard G Kibbey
Journal:  Cell Metab       Date:  2015-09-24       Impact factor: 27.287

9.  13C-isotope-based protocol for prenyl lipid metabolic analysis in zebrafish embryos.

Authors:  Vera Mugoni; Claudio Medana; Massimo M Santoro
Journal:  Nat Protoc       Date:  2013-10-31       Impact factor: 13.491

10.  Applications of metabolomics and proteomics to the mdx mouse model of Duchenne muscular dystrophy: lessons from downstream of the transcriptome.

Authors:  Julian L Griffin; Christine Des Rosiers
Journal:  Genome Med       Date:  2009-03-25       Impact factor: 11.117

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