Literature DB >> 16581808

Transcriptional termination sequences in the mouse serum albumin gene.

Steven West1, Kenneth Zaret, Nick J Proudfoot.   

Abstract

Poly(A) signals are required for efficient 3' end formation and transcriptional termination of most protein-encoding genes transcribed by RNA polymerase II. However, transcription can extend far beyond the poly(A) site before termination occurs. This implies the existence of further downstream termination signals. In mammals, a variety of sequence elements, in addition to the poly(A) site, have been implicated in the termination process. For example, termination of the human beta- and epsilon-globin genes is mediated by a sequence downstream of the poly(A) site that promotes an RNA cotranscriptional cleavage (CoTC). Here we report the identification of multiple termination sequences in the mouse serum albumin (MSA) 3' flanking region. Many transcripts from this region are cleaved cotranscriptionally, implying that such cleavage of pre-mRNA may be a more general feature of transcriptional termination.

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Year:  2006        PMID: 16581808      PMCID: PMC1421085          DOI: 10.1261/rna.2232406

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  37 in total

1.  Terminal exon definition occurs cotranscriptionally and promotes termination of RNA polymerase II.

Authors:  M J Dye; N J Proudfoot
Journal:  Mol Cell       Date:  1999-03       Impact factor: 17.970

Review 2.  Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.

Authors:  J Zhao; L Hyman; C Moore
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

3.  An RNA polymerase pause site is associated with the immunoglobulin mus poly(A) site.

Authors:  Martha L Peterson; Shannon Bertolino; Frankie Davis
Journal:  Mol Cell Biol       Date:  2002-08       Impact factor: 4.272

4.  Autocatalytic RNA cleavage in the human beta-globin pre-mRNA promotes transcription termination.

Authors:  Alexandre Teixeira; Abdessamad Tahiri-Alaoui; Steve West; Benjamin Thomas; Aroul Ramadass; Igor Martianov; Mick Dye; William James; Nick J Proudfoot; Alexandre Akoulitchev
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

5.  CTD-dependent dismantling of the RNA polymerase II elongation complex by the pre-mRNA 3'-end processing factor, Pcf11.

Authors:  Zhiqiang Zhang; Jianhua Fu; David S Gilmour
Journal:  Genes Dev       Date:  2005-07-01       Impact factor: 11.361

6.  Inactivation of the SR protein splicing factor ASF/SF2 results in genomic instability.

Authors:  Xialu Li; James L Manley
Journal:  Cell       Date:  2005-08-12       Impact factor: 41.582

7.  Mammalian poly(A)-binding protein is a eukaryotic translation initiation factor, which acts via multiple mechanisms.

Authors:  Avak Kahvejian; Yuri V Svitkin; Rami Sukarieh; Marie-Noël M'Boutchou; Nahum Sonenberg
Journal:  Genes Dev       Date:  2005-01-01       Impact factor: 11.361

8.  Human 5' --> 3' exonuclease Xrn2 promotes transcription termination at co-transcriptional cleavage sites.

Authors:  Steven West; Natalia Gromak; Nick J Proudfoot
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

9.  Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination.

Authors:  O Calvo; J L Manley
Journal:  Mol Cell       Date:  2001-05       Impact factor: 17.970

10.  Strong polyadenylation and weak pausing combine to cause efficient termination of transcription in the human Ggamma-globin gene.

Authors:  Kathryn E Plant; Michael J Dye; Celina Lafaille; Nick J Proudfoot
Journal:  Mol Cell Biol       Date:  2005-04       Impact factor: 4.272

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  13 in total

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Journal:  RNA       Date:  2006-06-14       Impact factor: 4.942

2.  Transcription termination by nuclear RNA polymerases.

Authors:  Patricia Richard; James L Manley
Journal:  Genes Dev       Date:  2009-06-01       Impact factor: 11.361

3.  Pause sites promote transcriptional termination of mammalian RNA polymerase II.

Authors:  Natalia Gromak; Steven West; Nick J Proudfoot
Journal:  Mol Cell Biol       Date:  2006-05       Impact factor: 4.272

4.  Transcriptional termination enhances protein expression in human cells.

Authors:  Steven West; Nicholas J Proudfoot
Journal:  Mol Cell       Date:  2009-02-13       Impact factor: 17.970

5.  A genomic analysis of RNA polymerase II modification and chromatin architecture related to 3' end RNA polyadenylation.

Authors:  Zheng Lian; Alexander Karpikov; Jin Lian; Milind C Mahajan; Stephen Hartman; Mark Gerstein; Michael Snyder; Sherman M Weissman
Journal:  Genome Res       Date:  2008-05-16       Impact factor: 9.043

6.  A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination.

Authors:  Sérgio F de Almeida; Ana García-Sacristán; Noélia Custódio; Maria Carmo-Fonseca
Journal:  Nucleic Acids Res       Date:  2010-08-10       Impact factor: 16.971

7.  A modified RMCE-compatible Rosa26 locus for the expression of transgenes from exogenous promoters.

Authors:  Jan S Tchorz; Thomas Suply; Iwona Ksiazek; Claudio Giachino; Dimitri Cloëtta; Claus-Peter Danzer; Thierry Doll; Andrea Isken; Marianne Lemaistre; Verdon Taylor; Bernhard Bettler; Bernd Kinzel; Matthias Mueller
Journal:  PLoS One       Date:  2012-01-13       Impact factor: 3.240

8.  A novel tandem reporter quantifies RNA polymerase II termination in mammalian cells.

Authors:  Ayan Banerjee; Mimi C Sammarco; Scott Ditch; Jeffrey Wang; Ed Grabczyk
Journal:  PLoS One       Date:  2009-07-09       Impact factor: 3.240

9.  Definition of RNA polymerase II CoTC terminator elements in the human genome.

Authors:  Takayuki Nojima; Martin Dienstbier; Shona Murphy; Nicholas J Proudfoot; Michael J Dye
Journal:  Cell Rep       Date:  2013-04-04       Impact factor: 9.423

10.  A manganese-dependent ribozyme in the 3'-untranslated region of Xenopus Vg1 mRNA.

Authors:  Nikolay G Kolev; Emilia I Hartland; Paul W Huber
Journal:  Nucleic Acids Res       Date:  2008-08-27       Impact factor: 16.971

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