Literature DB >> 16581372

Backbone-Backbone H-Bonds Make Context-Dependent Contributions to Protein Folding Kinetics and Thermodynamics: Lessons from Amide-to-Ester Mutations.

Evan T Powers1, Songpon Deechongkit, Jeffery W Kelly.   

Abstract

The contribution of backbone-backbone hydrogen bonds (H-bonds) to protein folding energetics has been controversial. This is due, at least in part, to the inability to perturb backbone-backbone H-bonds by traditional methods of protein mutagenesis. Recently, however, protein backbone mutagenesis has become possible with the development of chemical and biological methods to replace individual amides in the protein backbone with esters. Here, we review the use of amide-to-ester mutation as a tool to evaluate the contribution of backbone-backbone H-bonds to protein folding kinetics and thermodynamics.

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Year:  2005        PMID: 16581372     DOI: 10.1016/S0065-3233(05)72002-7

Source DB:  PubMed          Journal:  Adv Protein Chem        ISSN: 0065-3233


  26 in total

1.  Effects of peptide backbone amide-to-ester bond substitution on the cleavage frequency in electron capture dissociation and collision-activated dissociation.

Authors:  Frank Kjeldsen; Roman A Zubarev
Journal:  J Am Soc Mass Spectrom       Date:  2011-05-05       Impact factor: 3.109

Review 2.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

3.  Using protein backbone mutagenesis to dissect the link between ion occupancy and C-type inactivation in K+ channels.

Authors:  Kimberly Matulef; Alexander G Komarov; Corey A Costantino; Francis I Valiyaveetil
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-15       Impact factor: 11.205

4.  Interplay among side chain sequence, backbone composition, and residue rigidification in polypeptide folding and assembly.

Authors:  W Seth Horne; Joshua L Price; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-27       Impact factor: 11.205

5.  Sequence determinants of thermodynamic stability in a WW domain--an all-beta-sheet protein.

Authors:  Marcus Jäger; Maria Dendle; Jeffery W Kelly
Journal:  Protein Sci       Date:  2009-08       Impact factor: 6.725

Review 6.  Forces stabilizing proteins.

Authors:  C Nick Pace; J Martin Scholtz; Gerald R Grimsley
Journal:  FEBS Lett       Date:  2014-05-17       Impact factor: 4.124

7.  Individual Ion Binding Sites in the K(+) Channel Play Distinct Roles in C-type Inactivation and in Recovery from Inactivation.

Authors:  Kimberly Matulef; Alvin W Annen; Jay C Nix; Francis I Valiyaveetil
Journal:  Structure       Date:  2016-04-14       Impact factor: 5.006

8.  Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities.

Authors:  Maziar S Ardejani; Evan T Powers; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2017-07-19       Impact factor: 22.384

9.  Sub-nanoscale surface ruggedness provides a water-tight seal for exposed regions in soluble protein structure.

Authors:  Erica Schulz; Marisa Frechero; Gustavo Appignanesi; Ariel Fernández
Journal:  PLoS One       Date:  2010-09-17       Impact factor: 3.240

10.  Localized thermodynamic coupling between hydrogen bonding and microenvironment polarity substantially stabilizes proteins.

Authors:  Jianmin Gao; Daryl A Bosco; Evan T Powers; Jeffery W Kelly
Journal:  Nat Struct Mol Biol       Date:  2009-06-14       Impact factor: 15.369

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