Literature DB >> 16580974

Integrating molecular design resources within modern drug discovery research: the Roche experience.

Martin Stahl1, Wolfgang Guba, Manfred Kansy.   

Abstract

Various computational disciplines, such as cheminformatics, ADME modeling, virtual screening, chemogenomics search strategies and classic structure-based design, should be seen as one multifaceted discipline contributing to the early drug discovery process. Although significant resources enabling these activities have been established, their true integration into daily research should not be taken for granted. This article reviews value-adding activities from target assessment to lead optimization, and highlights the technical and process-related aspects that can be considered essential for performance and alignment within the research organization.

Mesh:

Year:  2006        PMID: 16580974     DOI: 10.1016/j.drudis.2006.02.008

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  10 in total

Review 1.  Computer-aided drug discovery and development (CADDD): in silico-chemico-biological approach.

Authors:  I M Kapetanovic
Journal:  Chem Biol Interact       Date:  2006-12-16       Impact factor: 5.192

2.  Pharmacophore-based virtual screening versus docking-based virtual screening: a benchmark comparison against eight targets.

Authors:  Zhi Chen; Hong-lin Li; Qi-jun Zhang; Xiao-guang Bao; Kun-qian Yu; Xiao-min Luo; Wei-liang Zhu; Hua-liang Jiang
Journal:  Acta Pharmacol Sin       Date:  2009-11-23       Impact factor: 6.150

3.  De novo design by pharmacophore-based searches in fragment spaces.

Authors:  Tobias Lippert; Tanja Schulz-Gasch; Olivier Roche; Wolfgang Guba; Matthias Rarey
Journal:  J Comput Aided Mol Des       Date:  2011-09-16       Impact factor: 3.686

4.  Pharmacophore-based virtual screening and biological evaluation of small molecule inhibitors for protein arginine methylation.

Authors:  Juxian Wang; Limin Chen; Sarmistha Halder Sinha; Zhongjie Liang; Huifang Chai; Sakthivel Muniyan; Yu-Wei Chou; Chao Yang; Leilei Yan; You Feng; Keqin Kathy Li; Ming-Fong Lin; Hualiang Jiang; Yujun George Zheng; Cheng Luo
Journal:  J Med Chem       Date:  2012-09-12       Impact factor: 7.446

5.  Identification of novel peroxisome proliferator-activated receptor-gamma (PPARγ) agonists using molecular modeling method.

Authors:  Veronica M W Gee; Fiona S L Wong; Lalitha Ramachandran; Gautam Sethi; Alan Prem Kumar; Chun Wei Yap
Journal:  J Comput Aided Mol Des       Date:  2014-08-29       Impact factor: 3.686

6.  Identification of Potent and Selective JAK1 Lead Compounds Through Ligand-Based Drug Design Approaches.

Authors:  Sathya Babu; Santhosh Kumar Nagarajan; Sruthy Sathish; Vir Singh Negi; Honglae Sohn; Thirumurthy Madhavan
Journal:  Front Pharmacol       Date:  2022-04-21       Impact factor: 5.988

Review 7.  Deep Learning in Drug Discovery and Medicine; Scratching the Surface.

Authors:  Dibyendu Dana; Satishkumar V Gadhiya; Luce G St Surin; David Li; Farha Naaz; Quaisar Ali; Latha Paka; Michael A Yamin; Mahesh Narayan; Itzhak D Goldberg; Prakash Narayan
Journal:  Molecules       Date:  2018-09-18       Impact factor: 4.411

8.  In silico structural elucidation of RNA-dependent RNA polymerase towards the identification of potential Crimean-Congo Hemorrhagic Fever Virus inhibitors.

Authors:  Muhammad Usman Mirza; Michiel Vanmeert; Matheus Froeyen; Amjad Ali; Shazia Rafique; Muhammad Idrees
Journal:  Sci Rep       Date:  2019-05-02       Impact factor: 4.379

9.  New concepts and approaches for drug discovery based on traditional Chinese medicine.

Authors:  Xiaojie Xu
Journal:  Drug Discov Today Technol       Date:  2006

10.  Elucidation of the molecular mechanisms underlying adverse reactions associated with a kinase inhibitor using systems toxicology.

Authors:  Takahiro Amemiya; Masashi Honma; Yoshiaki Kariya; Samik Ghosh; Hiroaki Kitano; Yoshihisa Kurachi; Ken-Ichi Fujita; Yasutsuna Sasaki; Yukio Homma; Darrel R Abernethy; Haruki Kume; Hiroshi Suzuki
Journal:  NPJ Syst Biol Appl       Date:  2015-09-28
  10 in total

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