Literature DB >> 16580733

Klusters, NeuroScope, NDManager: a free software suite for neurophysiological data processing and visualization.

Lynn Hazan1, Michaël Zugaro, György Buzsáki.   

Abstract

Recent technological advances now allow for simultaneous recording of large populations of anatomically distributed neurons in behaving animals. The free software package described here was designed to help neurophysiologists process and view recorded data in an efficient and user-friendly manner. This package consists of several well-integrated applications, including NeuroScope (http://neuroscope.sourceforce.net), an advanced viewer for electrophysiological and behavioral data with limited editing capabilities, Klusters (http://klusters.sourceforge.net), a graphical cluster cutting application for manual and semi-automatic spike sorting, NDManager (GPL,see http://www.gnu.org/licenses/gpl.html), an experimental parameter and data processing manager. All of these programs are distributed under the GNU General Public License (GPL, see ), which gives its users legal permission to copy, distribute and/or modify the software. Also included are extensive user manuals and sample data, as well as source code and documentation.

Mesh:

Year:  2006        PMID: 16580733     DOI: 10.1016/j.jneumeth.2006.01.017

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  219 in total

1.  Large-scale recording of neurons by movable silicon probes in behaving rodents.

Authors:  Marie Vandecasteele; S M; Sébastien Royer; Mariano Belluscio; Antal Berényi; Kamran Diba; Shigeyoshi Fujisawa; Andres Grosmark; Dun Mao; Kenji Mizuseki; Jagdish Patel; Eran Stark; David Sullivan; Brendon Watson; György Buzsáki
Journal:  J Vis Exp       Date:  2012-03-04       Impact factor: 1.355

2.  Song tutoring in presinging zebra finch juveniles biases a small population of higher-order song-selective neurons toward the tutor song.

Authors:  Patrice Adret; C Daniel Meliza; Daniel Margoliash
Journal:  J Neurophysiol       Date:  2012-07-11       Impact factor: 2.714

3.  Field potential signature of distinct multicellular activity patterns in the mouse hippocampus.

Authors:  Susanne Reichinnek; Thomas Künsting; Andreas Draguhn; Martin Both
Journal:  J Neurosci       Date:  2010-11-17       Impact factor: 6.167

4.  Intrinsic circuit organization and theta-gamma oscillation dynamics in the entorhinal cortex of the rat.

Authors:  Pascale Quilichini; Anton Sirota; György Buzsáki
Journal:  J Neurosci       Date:  2010-08-18       Impact factor: 6.167

5.  Prefrontal activity links nonoverlapping events in memory.

Authors:  Marieke R Gilmartin; Hiroyuki Miyawaki; Fred J Helmstetter; Kamran Diba
Journal:  J Neurosci       Date:  2013-06-26       Impact factor: 6.167

6.  Gamma oscillations organize top-down signalling to hypothalamus and enable food seeking.

Authors:  Marta Carus-Cadavieco; Maria Gorbati; Li Ye; Franziska Bender; Suzanne van der Veldt; Christin Kosse; Christoph Börgers; Soo Yeun Lee; Charu Ramakrishnan; Yubin Hu; Natalia Denisova; Franziska Ramm; Emmanouela Volitaki; Denis Burdakov; Karl Deisseroth; Alexey Ponomarenko; Tatiana Korotkova
Journal:  Nature       Date:  2017-02-01       Impact factor: 49.962

7.  High-frequency EEG covaries with spike burst patterns detected in cortical neurons.

Authors:  Bartosz Telenczuk; Stuart N Baker; Andreas V M Herz; Gabriel Curio
Journal:  J Neurophysiol       Date:  2011-04-13       Impact factor: 2.714

8.  Traumatic Brain Injury Preserves Firing Rates But Disrupts Laminar Oscillatory Coupling and Neuronal Entrainment in Hippocampal CA1.

Authors:  Paul F Koch; Carlo Cottone; Christopher D Adam; Alexandra V Ulyanova; Robin J Russo; Maura T Weber; John D Arena; Victoria E Johnson; John A Wolf
Journal:  eNeuro       Date:  2020-09-02

9.  Hippocampal network dynamics constrain the time lag between pyramidal cells across modified environments.

Authors:  Kamran Diba; György Buzsáki
Journal:  J Neurosci       Date:  2008-12-10       Impact factor: 6.167

10.  Multi-dimensional Coding by Basolateral Amygdala Neurons.

Authors:  Pinelopi Kyriazi; Drew B Headley; Denis Pare
Journal:  Neuron       Date:  2018-08-23       Impact factor: 17.173

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