Literature DB >> 16579630

Transition metal-peptide binding studied by metal-catalyzed oxidation reactions and mass spectrometry.

Juma D Bridgewater1, Jihyeon Lim, Richard W Vachet.   

Abstract

We have identified conditions that allow metal-catalyzed oxidation (MCO) reactions and mass spectrometry (MS) to correctly identify binding sites of first-row transition metal ions to model peptides. This work extends the applicability of the MCO/MS method to metals other than Cu(II). When the appropriate reducing agent (ascorbate, 10 mM) and oxidizing agent concentrations (1 mM persulfate, atmospheric O2, or both) are used, metal-bound amino acids can be sufficiently and specifically oxidized for clear identification by MS. The MCO reactions with Mn(II), Fe(II), Co(II), and Ni(II) occur to lesser extents than with Cu(II), but oxidation is still extensive enough to allow easy identification of the metal-bound residues. With the exception of aspartic acid, the known metal-binding amino acids of angiotensin I and bacitracin A are oxidized, while no oxidation is observed at nonbinding residues. Failure to oxidize aspartic acid is likely due to the relatively slow reactivity of its carboxylic acid side chain with reactive oxygen species, suggesting that the current MCO/MS protocol is transparent to such acidic residues. Overall, this study indicates that, just as is possible for Cu(II), the MCO/MS method should be suitable for determining the Mn(II)-, Fe(II)-, Co(II)-, and Ni(II)-binding sites of metalloproteins.

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Year:  2006        PMID: 16579630     DOI: 10.1021/ac051983r

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  21 in total

1.  The effect of histidine oxidation on the dissociation patterns of peptide ions.

Authors:  Juma D Bridgewater; R Srikanth; Jihyeon Lim; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2006-12-08       Impact factor: 3.109

2.  Improved sequencing of oxidized cysteine and methionine containing peptides using electron transfer dissociation.

Authors:  R Srikanth; Jonathan Wilson; Juma D Bridgewater; Jason R Numbers; Jihyeon Lim; Mark R Olbris; Ali Kettani; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2007-05-23       Impact factor: 3.109

3.  Complex Nature of Protein Carbonylation Specificity After Metal-Catalyzed Oxidation.

Authors:  Dmitry Kryndushkin; Wells W Wu; Ramesh Venna; Michael A Norcross; Rong-Fong Shen; V Ashutosh Rao
Journal:  Pharm Res       Date:  2017-02-01       Impact factor: 4.200

4.  Using metal-catalyzed oxidation reactions and mass spectrometry to identify amino acid residues within 10 A of the metal in Cu-binding proteins.

Authors:  Juma D Bridgewater; Jihyeon Lim; Richard W Vachet
Journal:  J Am Soc Mass Spectrom       Date:  2006-07-26       Impact factor: 3.109

Review 5.  Covalent labeling-mass spectrometry with non-specific reagents for studying protein structure and interactions.

Authors:  Patanachai Limpikirati; Tianying Liu; Richard W Vachet
Journal:  Methods       Date:  2018-04-07       Impact factor: 3.608

6.  Sulfate radical anion as a new reagent for fast photochemical oxidation of proteins.

Authors:  Brian C Gau; Hao Chen; Yun Zhang; Michael L Gross
Journal:  Anal Chem       Date:  2010-09-15       Impact factor: 6.986

7.  Divalent metal ions in plant mitochondria and their role in interactions with proteins and oxidative stress-induced damage to respiratory function.

Authors:  Yew-Foon Tan; Nicholas O'Toole; Nicolas L Taylor; A Harvey Millar
Journal:  Plant Physiol       Date:  2009-12-14       Impact factor: 8.340

8.  Identification of the copper(II) coordinating residues in the prion protein by metal-catalyzed oxidation mass spectrometry: evidence for multiple isomers at low copper(II) loadings.

Authors:  Rapole Srikanth; Jonathan Wilson; Colin S Burns; Richard W Vachet
Journal:  Biochemistry       Date:  2008-08-09       Impact factor: 3.162

9.  Probing the Time Scale of FPOP (Fast Photochemical Oxidation of Proteins): Radical Reactions Extend Over Tens of Milliseconds.

Authors:  Siavash Vahidi; Lars Konermann
Journal:  J Am Soc Mass Spectrom       Date:  2016-04-11       Impact factor: 3.109

10.  Copper binding to beta-2-microglobulin and its pre-amyloid oligomers.

Authors:  Rapole Srikanth; Vanessa Leah Mendoza; Juma D Bridgewater; Guanshi Zhang; Richard W Vachet
Journal:  Biochemistry       Date:  2009-10-20       Impact factor: 3.162

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