Literature DB >> 16573589

DNA microarray and proteomic strategies for understanding alcohol action.

James M Sikela1, Erik J Maclaren, Young Kim, Anis Karimpour-Fard, Wei-Wen Cai, Jonathan Pollack, Robert Hitzemann, John Belknap, Shannon McWeeney, Robnet T Kerns, Chris Downing, Thomas E Johnson, Kathleen J Grant, Boris Tabakoff, Paula Hoffman, Christine C Wu, Michael F Miles.   

Abstract

This article summarizes the proceedings of a symposium presented at the 2005 annual meeting of the Research Society on Alcoholism in Santa Barbara, California. The organizer was James M. Sikela, and he and Michael F. Miles were chairs. The presentations were (1) Genomewide Surveys of Gene Copy Number Variation in Human and Mouse: Implications for the Genetics of Alcohol Action, by James M. Sikela; (2) Regional Differences in the Regulation of Brain Gene Expression: Relevance to the Detection of Genes Associated with Alcohol-Related Traits, by Robert Hitzemann; (3) Identification of Ethanol Quantitative Trait Loci Candidate Genes by Expression Profiling in Inbred Long Sleep/Inbred Short Sleep Congenic Mice, by Robnet T. Kerns; and (4) Quantitative Proteomic Analysis of AC7-Modified Mice, by Kathleen J. Grant.

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Year:  2006        PMID: 16573589      PMCID: PMC2709534          DOI: 10.1111/j.1530-0277.2006.00081.x

Source DB:  PubMed          Journal:  Alcohol Clin Exp Res        ISSN: 0145-6008            Impact factor:   3.455


  53 in total

1.  Quantitative-trait loci analysis of cocaine-related behaviours and neurochemistry.

Authors:  B C Jones; L M Tarantino; L A Rodriguez; C L Reed; G E McClearn; R Plomin; V G Erwin
Journal:  Pharmacogenetics       Date:  1999-10

2.  Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Authors:  J R Pollack; C M Perou; A A Alizadeh; M B Eisen; A Pergamenschikov; C F Williams; S S Jeffrey; D Botstein; P O Brown
Journal:  Nat Genet       Date:  1999-09       Impact factor: 38.330

3.  Overexpression of dopamine D2 receptors reduces alcohol self-administration.

Authors:  P K Thanos; N D Volkow; P Freimuth; H Umegaki; H Ikari; G Roth; D K Ingram; R Hitzemann
Journal:  J Neurochem       Date:  2001-09       Impact factor: 5.372

4.  Further characterization and high-resolution mapping of quantitative trait loci for ethanol-induced locomotor activity.

Authors:  K Demarest; J Koyner; J McCaughran; L Cipp; R Hitzemann
Journal:  Behav Genet       Date:  2001-01       Impact factor: 2.805

5.  A new algorithm for analysis of oligonucleotide arrays: application to expression profiling in mouse brain regions.

Authors:  Li Zhang; Long Wang; Ajay Ravindranathan; Michael F Miles
Journal:  J Mol Biol       Date:  2002-03-22       Impact factor: 5.469

6.  High-throughput sequence identification of gene coding variants within alcohol-related QTLs.

Authors:  M A Ehringer; J Thompson; O Conroy; Y Xu; F Yang; J Canniff; M Beeson; L Gordon; B Bennett; T E Johnson; J M Sikela
Journal:  Mamm Genome       Date:  2001-08       Impact factor: 2.957

7.  Ethanol-conditioned place preference is reduced in dopamine D2 receptor-deficient mice.

Authors:  C L Cunningham; M A Howard; S J Gill; M Rubinstein; M J Low; D K Grandy
Journal:  Pharmacol Biochem Behav       Date:  2000-12       Impact factor: 3.533

8.  Identification of amplified and expressed genes in breast cancer by comparative hybridization onto microarrays of randomly selected cDNA clones.

Authors:  Jeremy Clark; Sandra Edwards; Megan John; Penny Flohr; Tony Gordon; Karine Maillard; Ian Giddings; Carolanne Brown; Azadeh Bagherzadeh; Colin Campbell; Janet Shipley; Richard Wooster; Colin S Cooper
Journal:  Genes Chromosomes Cancer       Date:  2002-05       Impact factor: 5.006

9.  Gene rearranagement on 1q21 introducing a duplication of the glucocerebrosidase pseudogene and a metaxin fusion gene.

Authors:  N Tayebi; J Park; V Madike; E Sidransky
Journal:  Hum Genet       Date:  2000-10       Impact factor: 4.132

10.  The replicability of QTLs for murine alcohol preference drinking behavior across eight independent studies.

Authors:  J K Belknap; A L Atkins
Journal:  Mamm Genome       Date:  2001-12       Impact factor: 2.957

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  11 in total

1.  15N metabolic labeling of mammalian tissue with slow protein turnover.

Authors:  Daniel B McClatchy; Meng-Qiu Dong; Christine C Wu; John D Venable; John R Yates
Journal:  J Proteome Res       Date:  2007-03-22       Impact factor: 4.466

Review 2.  Proteomic approaches and identification of novel therapeutic targets for alcoholism.

Authors:  Giorgio Gorini; R Adron Harris; R Dayne Mayfield
Journal:  Neuropsychopharmacology       Date:  2013-07-31       Impact factor: 7.853

Review 3.  Genes and Alcohol Consumption: Studies with Mutant Mice.

Authors:  J Mayfield; M A Arends; R A Harris; Y A Blednov
Journal:  Int Rev Neurobiol       Date:  2016       Impact factor: 3.230

4.  Advancing alcohol biomarkers research.

Authors:  Cynthia F Bearer; Shannon M Bailey; Jan B Hoek
Journal:  Alcohol Clin Exp Res       Date:  2010-04-05       Impact factor: 3.455

Review 5.  Modeling the diagnostic criteria for alcohol dependence with genetic animal models.

Authors:  John C Crabbe; Kenneth S Kendler; Robert J Hitzemann
Journal:  Curr Top Behav Neurosci       Date:  2013

Review 6.  Introduction to sequencing the brain transcriptome.

Authors:  Robert Hitzemann; Priscila Darakjian; Nikki Walter; Ovidiu Dan Iancu; Robert Searles; Shannon McWeeney
Journal:  Int Rev Neurobiol       Date:  2014       Impact factor: 3.230

Review 7.  Genes, behavior and next-generation RNA sequencing.

Authors:  R Hitzemann; D Bottomly; P Darakjian; N Walter; O Iancu; R Searles; B Wilmot; S McWeeney
Journal:  Genes Brain Behav       Date:  2012-12-28       Impact factor: 3.449

8.  Evaluating gene expression in C57BL/6J and DBA/2J mouse striatum using RNA-Seq and microarrays.

Authors:  Daniel Bottomly; Nicole A R Walter; Jessica Ezzell Hunter; Priscila Darakjian; Sunita Kawane; Kari J Buck; Robert P Searles; Michael Mooney; Shannon K McWeeney; Robert Hitzemann
Journal:  PLoS One       Date:  2011-03-24       Impact factor: 3.240

9.  The influence of adolescent nicotine exposure on ethanol intake and brain gene expression.

Authors:  Constanza P Silva; William J Horton; Michael J Caruso; Aswathy Sebastian; Laura C Klein; Istvan Albert; Helen M Kamens
Journal:  PLoS One       Date:  2018-06-18       Impact factor: 3.240

Review 10.  Proteomic approaches for studying alcoholism and alcohol-induced organ damage.

Authors:  Susanne Hiller-Sturmhöfel; Josip Sobin; R Dayne Mayfield
Journal:  Alcohol Res Health       Date:  2008
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