Literature DB >> 16571043

Magnitude of the CH/pi interaction in the gas phase: experimental and theoretical determination of the accurate interaction energy in benzene-methane.

Kenta Shibasaki1, Asuka Fujii, Naohiko Mikami, Seiji Tsuzuki.   

Abstract

The accurate CH/pi interaction energy of the benzene-methane model system was experimentally and theoretically determined. In the experiment, mass analyzed threshold ionization spectroscopy was applied to the benzene-methane cluster in the gas phase, prepared in a supersonic molecular beam. The binding energy in the neutral ground state of the cluster, which is regarded as the CH/pi interaction energy for this model system, was evaluated from the dissociation threshold measurements of the cluster cation. The experimentally determined binding energy (D(0)) was 1.03-1.13 kcal/mol. The interaction energy of the model system was calculated by ab initio molecular orbital methods. The estimated CCSD(T) interaction energy at the basis set limit (D(e)) was -1.43 kcal/mol. The calculated binding energy (D(0)) after the vibrational zero-point energy correction (1.13 kcal/mol) agrees well with the experimental value. The effects of basis set and electron correlation correction procedure on the calculated CH/pi interaction energy were evaluated. Accuracy of the calculated interaction energies by DFT methods using BLYP, B3LYP, PW91 and PBE functionals was also discussed.

Entities:  

Year:  2006        PMID: 16571043     DOI: 10.1021/jp0605909

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

1.  Theoretical investigations of the H···π and X (X = F, Cl, Br, I)···π complexes between hypohalous acids and benzene.

Authors:  Qiang Zhao; Dacheng Feng; Youmin Sun; Jingcheng Hao; Zhengting Cai
Journal:  J Mol Model       Date:  2010-12-01       Impact factor: 1.810

2.  Computational study on C-H...π interactions of acetylene with benzene, 1,3,5-trifluorobenzene and coronene.

Authors:  Tandabany C Dinadayalane; Guvanchmyrat Paytakov; Jerzy Leszczynski
Journal:  J Mol Model       Date:  2012-12-18       Impact factor: 1.810

3.  Importance of dispersion and electron correlation in ab initio protein folding.

Authors:  Xiao He; Laszlo Fusti-Molnar; Guanglei Cui; Kenneth M Merz
Journal:  J Phys Chem B       Date:  2009-04-16       Impact factor: 2.991

4.  The DNA glycosylase AlkD uses a non-base-flipping mechanism to excise bulky lesions.

Authors:  Elwood A Mullins; Rongxin Shi; Zachary D Parsons; Philip K Yuen; Sheila S David; Yasuhiro Igarashi; Brandt F Eichman
Journal:  Nature       Date:  2015-10-28       Impact factor: 49.962

5.  XH/pi interactions with the pi system of porphyrin ring in porphyrin-containing proteins.

Authors:  Srdan D Stojanović; Vesna B Medaković; Goran Predović; Milos Beljanski; Snezana D Zarić
Journal:  J Biol Inorg Chem       Date:  2007-07-21       Impact factor: 3.862

6.  Strong orbital interaction in a weak CH-π hydrogen bonding system.

Authors:  Jianfu Li; Rui-Qin Zhang
Journal:  Sci Rep       Date:  2016-03-01       Impact factor: 4.379

7.  Toxicity and repair of DNA adducts produced by the natural product yatakemycin.

Authors:  Elwood A Mullins; Rongxin Shi; Brandt F Eichman
Journal:  Nat Chem Biol       Date:  2017-07-24       Impact factor: 15.040

8.  Structural evolution of a DNA repair self-resistance mechanism targeting genotoxic secondary metabolites.

Authors:  Elwood A Mullins; Jonathan Dorival; Gong-Li Tang; Dale L Boger; Brandt F Eichman
Journal:  Nat Commun       Date:  2021-11-26       Impact factor: 14.919

9.  Dissecting C-H∙∙∙π and N-H∙∙∙π Interactions in Two Proteins Using a Combined Experimental and Computational Approach.

Authors:  Jia Wang; Lishan Yao
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

10.  PI by NMR: Probing CH-π Interactions in Protein-Ligand Complexes by NMR Spectroscopy.

Authors:  Gerald Platzer; Moriz Mayer; Andreas Beier; Sven Brüschweiler; Julian E Fuchs; Harald Engelhardt; Leonhard Geist; Gerd Bader; Julia Schörghuber; Roman Lichtenecker; Bernhard Wolkerstorfer; Dirk Kessler; Darryl B McConnell; Robert Konrat
Journal:  Angew Chem Int Ed Engl       Date:  2020-07-15       Impact factor: 16.823

  10 in total

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