Literature DB >> 16571015

Dependence of tryptophan emission wavelength on conformation in cyclic hexapeptides.

Chia-Pin Pan1, Patrik R Callis, Mary D Barkley.   

Abstract

The wavelength of maximum emission of tryptophan depends on the local electrostatic environment of the indole chromophore. The time-resolved emission spectra of seven rigid cyclic hexapeptides containing a single tryptophan residue were measured. The emission maxima of the three decay-associated spectra for the seven peptides ranged from 341 to 359 nm, suggesting that different tryptophan rotamers have different emission maxima even in the case of solvent-exposed tryptophans. This conclusion is supported by quantum mechanical/molecular dynamics simulations of the six canonical side chain rotamers of tryptophan in solvated hexapeptides. The calculated range of emission maxima for the tryptophan rotamers of the seven peptides is 344-365 nm. The precision of the wavelength calculations and the peptide, water, and charged side chain contributions to the spectral shifts are examined. The results indicate that the emission maxima of decay-associated spectra can aid in the assignment of fluorescence lifetimes to tryptophan rotamers.

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Year:  2006        PMID: 16571015     DOI: 10.1021/jp056164p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  Excited protein states of human tear lipocalin for low- and high-affinity ligand binding revealed by functional AB loop motion.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Biophys Chem       Date:  2010-04-09       Impact factor: 2.352

2.  Dissection of complex protein dynamics in human thioredoxin.

Authors:  Weihong Qiu; Lijuan Wang; Wenyun Lu; Amanda Boechler; David A R Sanders; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-16       Impact factor: 11.205

Review 3.  Ultrafast fluorescence spectroscopy via upconversion applications to biophysics.

Authors:  Jianhua Xu; Jay R Knutson
Journal:  Methods Enzymol       Date:  2008       Impact factor: 1.600

4.  Effect of short- and long-range interactions on trp rotamer populations determined by site-directed tryptophan fluorescence of tear lipocalin.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  PLoS One       Date:  2013-10-28       Impact factor: 3.240

5.  Investigation of membrane penetration depth and interactions of the amino-terminal domain of huntingtin: refined analysis by tryptophan fluorescence measurement.

Authors:  Matthias Michalek; Christopher Aisenbrey; Burkhard Bechinger
Journal:  Eur Biophys J       Date:  2014-06-04       Impact factor: 1.733

6.  Exploring protein solution structure: Second moments of fluorescent spectra report heterogeneity of tryptophan rotamers.

Authors:  Oktay K Gasymov; Adil R Abduragimov; Ben J Glasgow
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2015-06-19       Impact factor: 4.098

7.  A spectroscopic survey of substituted indoles reveals consequences of a stabilized 1Lb transition.

Authors:  Xianwei Meng; Trisheena Harricharran; Laura J Juszczak
Journal:  Photochem Photobiol       Date:  2012-09-18       Impact factor: 3.421

8.  Quasi-static self-quenching of Trp-X and X-Trp dipeptides in water: ultrafast fluorescence decay.

Authors:  Jianhua Xu; Jay R Knutson
Journal:  J Phys Chem B       Date:  2009-09-03       Impact factor: 2.991

9.  Peptide sequence and conformation strongly influence tryptophan fluorescence.

Authors:  Roy W Alston; Mauricio Lasagna; Gerald R Grimsley; J Martin Scholtz; Gregory D Reinhart; C Nick Pace
Journal:  Biophys J       Date:  2007-12-07       Impact factor: 4.033

10.  Femtosecond fluorescence spectra of tryptophan in human gamma-crystallin mutants: site-dependent ultrafast quenching.

Authors:  Jianhua Xu; Jiejin Chen; Dmitri Toptygin; Olga Tcherkasskaya; Patrik Callis; Jonathan King; Ludwig Brand; Jay R Knutson
Journal:  J Am Chem Soc       Date:  2009-11-25       Impact factor: 15.419

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