Literature DB >> 16569872

Substrate envelope and drug resistance: crystal structure of RO1 in complex with wild-type human immunodeficiency virus type 1 protease.

Moses Prabu-Jeyabalan1, Nancy M King, Ellen A Nalivaika, Gabrielle Heilek-Snyder, Nick Cammack, Celia A Schiffer.   

Abstract

In our previous crystallographic studies of human immunodeficiency virus type 1 (HIV-1) protease-substrate complexes, we described a conserved "envelope" that appears to be important for substrate recognition and the selection of drug-resistant mutations. In this study, the complex of HIV-1 protease with the inhibitor RO1 was determined and comparison with the substrate envelope provides a rationale for mutational patterns.

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Year:  2006        PMID: 16569872      PMCID: PMC1426980          DOI: 10.1128/AAC.50.4.1518-1521.2006

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN: 0066-4804            Impact factor:   5.191


  15 in total

1.  Substrate shape determines specificity of recognition for HIV-1 protease: analysis of crystal structures of six substrate complexes.

Authors:  Moses Prabu-Jeyabalan; Ellen Nalivaika; Celia A Schiffer
Journal:  Structure       Date:  2002-03       Impact factor: 5.006

2.  Combating susceptibility to drug resistance: lessons from HIV-1 protease.

Authors:  Nancy M King; Moses Prabu-Jeyabalan; Ellen A Nalivaika; Celia A Schiffer
Journal:  Chem Biol       Date:  2004-10

Review 3.  Development of drug resistance to HIV-1 protease inhibitors.

Authors:  T Ridky; J Leis
Journal:  J Biol Chem       Date:  1995-12-15       Impact factor: 5.157

4.  Improving lopinavir genotype algorithm through phenotype correlations: novel mutation patterns and amprenavir cross-resistance.

Authors:  Neil T Parkin; Colombe Chappey; Christos J Petropoulos
Journal:  AIDS       Date:  2003-05-02       Impact factor: 4.177

5.  Structural basis for coevolution of a human immunodeficiency virus type 1 nucleocapsid-p1 cleavage site with a V82A drug-resistant mutation in viral protease.

Authors:  Moses Prabu-Jeyabalan; Ellen A Nalivaika; Nancy M King; Celia A Schiffer
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

6.  Viracept (nelfinavir mesylate, AG1343): a potent, orally bioavailable inhibitor of HIV-1 protease.

Authors:  S W Kaldor; V J Kalish; J F Davies; B V Shetty; J E Fritz; K Appelt; J A Burgess; K M Campanale; N Y Chirgadze; D K Clawson; B A Dressman; S D Hatch; D A Khalil; M B Kosa; P P Lubbehusen; M A Muesing; A K Patick; S H Reich; K S Su; J H Tatlock
Journal:  J Med Chem       Date:  1997-11-21       Impact factor: 7.446

Review 7.  The influence of protease inhibitor resistance profiles on selection of HIV therapy in treatment-naive patients.

Authors:  Dan Turner; Jonathan M Schapiro; Bluma G Brenner; Mark A Wainberg
Journal:  Antivir Ther       Date:  2004-06

8.  Human Immunodeficiency Virus Reverse Transcriptase and Protease Sequence Database.

Authors:  R W Shafer; D Stevenson; B Chan
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

9.  Structural and thermodynamic basis for the binding of TMC114, a next-generation human immunodeficiency virus type 1 protease inhibitor.

Authors:  Nancy M King; Moses Prabu-Jeyabalan; Ellen A Nalivaika; Piet Wigerinck; Marie-Pierre de Béthune; Celia A Schiffer
Journal:  J Virol       Date:  2004-11       Impact factor: 5.103

10.  Viability of a drug-resistant human immunodeficiency virus type 1 protease variant: structural insights for better antiviral therapy.

Authors:  Moses Prabu-Jeyabalan; Ellen A Nalivaika; Nancy M King; Celia A Schiffer
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

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  19 in total

1.  Drug resistance against HCV NS3/4A inhibitors is defined by the balance of substrate recognition versus inhibitor binding.

Authors:  Keith P Romano; Akbar Ali; William E Royer; Celia A Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-17       Impact factor: 11.205

2.  Nine crystal structures determine the substrate envelope of the MDR HIV-1 protease.

Authors:  Zhigang Liu; Yong Wang; Joseph Brunzelle; Iulia A Kovari; Ladislau C Kovari
Journal:  Protein J       Date:  2011-03       Impact factor: 2.371

Review 3.  Multifaceted HIV integrase functionalities and therapeutic strategies for their inhibition.

Authors:  Alan N Engelman
Journal:  J Biol Chem       Date:  2019-08-29       Impact factor: 5.157

4.  A virtual screen discovers novel, fragment-sized inhibitors of Mycobacterium tuberculosis InhA.

Authors:  Alexander L Perryman; Weixuan Yu; Xin Wang; Sean Ekins; Stefano Forli; Shao-Gang Li; Joel S Freundlich; Peter J Tonge; Arthur J Olson
Journal:  J Chem Inf Model       Date:  2015-02-17       Impact factor: 4.956

5.  Kinetic characterization of the critical step in HIV-1 protease maturation.

Authors:  S Kashif Sadiq; Frank Noé; Gianni De Fabritiis
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-26       Impact factor: 11.205

6.  Identification of folding preferences of cleavage junctions of HIV-1 precursor proteins for regulation of cleavability.

Authors:  Hirotaka Ode; Masaru Yokoyama; Tadahito Kanda; Hironori Sato
Journal:  J Mol Model       Date:  2010-05-18       Impact factor: 1.810

7.  Extreme entropy-enthalpy compensation in a drug-resistant variant of HIV-1 protease.

Authors:  Nancy M King; Moses Prabu-Jeyabalan; Rajintha M Bandaranayake; Madhavi N L Nalam; Ellen A Nalivaika; Ayşegül Özen; Türkan Haliloğlu; Neşe Kurt Yilmaz; Celia A Schiffer
Journal:  ACS Chem Biol       Date:  2012-07-02       Impact factor: 5.100

8.  The challenge of developing robust drugs to overcome resistance.

Authors:  Amy C Anderson; Michael P Pollastri; Celia A Schiffer; Norton P Peet
Journal:  Drug Discov Today       Date:  2011-07-19       Impact factor: 7.851

9.  Crystal structure of lysine sulfonamide inhibitor reveals the displacement of the conserved flap water molecule in human immunodeficiency virus type 1 protease.

Authors:  Madhavi N L Nalam; Anik Peeters; Tim H M Jonckers; Inge Dierynck; Celia A Schiffer
Journal:  J Virol       Date:  2007-06-27       Impact factor: 5.103

10.  New approaches to HIV protease inhibitor drug design II: testing the substrate envelope hypothesis to avoid drug resistance and discover robust inhibitors.

Authors:  Madhavi N L Nalam; Celia A Schiffer
Journal:  Curr Opin HIV AIDS       Date:  2008-11       Impact factor: 4.283

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