Literature DB >> 16568269

Initial guesses generation for Fluorescence Intensity Distribution Analysis.

Victor V Skakun1, Eugene G Novikov, Vladimir V Apanasovich, Hans J Tanke, André M Deelder, Oleg A Mayboroda.   

Abstract

The growing number of applications of Fluorescence Intensity Distribution Analysis (FIDA) demands for new approaches in data processing, aiming at increased speed and robustness. Iterative algorithms of parameter estimation, although proven to be universal and accurate, require some initial guesses (IG) of the unknown parameters. An essential component of any data processing technology, IG become especially important in case of FIDA, since even with apparently reasonable, and physically admissible but randomly chosen IG, the iterative procedure may converge to situations where the FIDA model cannot be evaluated correctly. In the present work we introduce an approach for IG generation in FIDA experiments based on the method of moments. IG are generated for the sample parameters: brightness, concentration, and for the parameters related to experimental set-up: background, observation volume profile. A number of analytical simplifications were introduced in order to increase the accuracy and robustness of the numerical algorithms. The performance of the developed method has been tested on number of simulations and experimental data. Iterative fitting with generated IG proved to be more robust and at least five times faster than with an arbitrarily chosen IG. Applicability of the proposed method for quick estimation of brightness and concentrations is discussed.

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Year:  2006        PMID: 16568269     DOI: 10.1007/s00249-006-0048-8

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  18 in total

1.  Fluorescence-intensity distribution analysis and its application in biomolecular detection technology.

Authors:  P Kask; K Palo; D Ullmann; K Gall
Journal:  Proc Natl Acad Sci U S A       Date:  1999-11-23       Impact factor: 11.205

2.  Resolving heterogeneity on the single molecular level with the photon-counting histogram.

Authors:  J D Müller; Y Chen; E Gratton
Journal:  Biophys J       Date:  2000-01       Impact factor: 4.033

3.  Fluorescence intensity multiple distributions analysis: concurrent determination of diffusion times and molecular brightness.

Authors:  K Palo; U Mets; S Jäger; P Kask; K Gall
Journal:  Biophys J       Date:  2000-12       Impact factor: 4.033

4.  Probing ligand protein binding equilibria with fluorescence fluctuation spectroscopy.

Authors:  Y Chen; J D Müller; S Y Tetin; J D Tyner; E Gratton
Journal:  Biophys J       Date:  2000-08       Impact factor: 4.033

Review 5.  Biological and chemical applications of fluorescence correlation spectroscopy: a review.

Authors:  Samuel T Hess; Shaohui Huang; Ahmed A Heikal; Watt W Webb
Journal:  Biochemistry       Date:  2002-01-22       Impact factor: 3.162

6.  Molecular brightness characterization of EGFP in vivo by fluorescence fluctuation spectroscopy.

Authors:  Yan Chen; Joachim D Müller; QiaoQiao Ruan; Enrico Gratton
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

7.  Fluorescence intensity and lifetime distribution analysis: toward higher accuracy in fluorescence fluctuation spectroscopy.

Authors:  Kaupo Palo; Leif Brand; Christian Eggeling; Stefan Jäger; Peet Kask; Karsten Gall
Journal:  Biophys J       Date:  2002-08       Impact factor: 4.033

8.  On the statistics of fluorescence correlation spectroscopy.

Authors:  H Qian
Journal:  Biophys Chem       Date:  1990-10       Impact factor: 2.352

9.  On the analysis of high order moments of fluorescence fluctuations.

Authors:  H Qian; E L Elson
Journal:  Biophys J       Date:  1990-02       Impact factor: 4.033

10.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

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