Literature DB >> 16559080

Methods for the determination of deoxyribonucleic Acid homologies in streptomyces.

M Okanishi1, K F Gregory.   

Abstract

Variations of the membrane filter technique for deoxyribonucleic acid (DNA) hybridizations were studied with respect to Streptomyces species. At the temperatures required for specific hybridization of DNA with the high melting temperature (T(m)) characteristic of Streptomyces, large amounts (up to 97%) of filter-bound DNA became eluted, in all reaction mixtures studied, within 21 hr. In most solutions this leaching was increased by the presence of sheared denatured DNA. Incubation of DNA-loaded filters in a solution of 50% formamide containing 6x standard saline citrate, at 48 C for 40 hr, was judged to be the best set of conditions tested based on relatively good retention of immobilized DNA, very low hybridization with unrelated DNA of a similarly high T(m) (from Sarcina lutea), and the formation of complexes similar in thermal stability to the native DNA. The expression of results as sheared DNA bound in relation to long-chain DNA retained is recommended when a high concentration of sheared DNA relative to immobilized DNA is used.

Entities:  

Year:  1970        PMID: 16559080      PMCID: PMC248264          DOI: 10.1128/jb.104.3.1086-1094.1970

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  20 in total

1.  Regulation of transcription of the SV40 DNA in productively infected and in transformed cells.

Authors:  K Oda; R Dulbecco
Journal:  Proc Natl Acad Sci U S A       Date:  1968-06       Impact factor: 11.205

2.  A method for the hybridization of nucleic acid molecules at low temperature.

Authors:  J Bonner; G Kung; I Bekhor
Journal:  Biochemistry       Date:  1967-12       Impact factor: 3.162

3.  Deoxyribonucleic acid homology in bacterial taxonomy: effect of incubation temperature on reaction specificity.

Authors:  J L Johnson; E J Ordal
Journal:  J Bacteriol       Date:  1968-03       Impact factor: 3.490

4.  A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane.

Authors:  D Gillespie; S Spiegelman
Journal:  J Mol Biol       Date:  1965-07       Impact factor: 5.469

5.  A quantitative assay for DNA-DNA hybrids using membrane filters.

Authors:  S O Warmaar; J A Cohen
Journal:  Biochem Biophys Res Commun       Date:  1966-08-23       Impact factor: 3.575

6.  Nucleic acid reassociation in formamide.

Authors:  B L McConaughy; C D Laird; B J McCarthy
Journal:  Biochemistry       Date:  1969-08       Impact factor: 3.162

7.  A membrane-filter technique for the detection of complementary DNA.

Authors:  D T Denhardt
Journal:  Biochem Biophys Res Commun       Date:  1966-06-13       Impact factor: 3.575

8.  Reassociation of deoxyribonucleic acids from Actinoplanes and other actinomycetes.

Authors:  G Farina; S G Bradley
Journal:  J Bacteriol       Date:  1970-04       Impact factor: 3.490

9.  Nucleic acid similarities among Pseudomonas pseudomallei, Pseudomonas multivorans, and Actinobacillus mallei.

Authors:  M Rogul; J J Brendle; D K Haapala; A D Alexander
Journal:  J Bacteriol       Date:  1970-03       Impact factor: 3.490

10.  Genetic homologies among Streptomyces violaceoruber strains.

Authors:  A M Monson; S G Bradley; L W Enquist; G Cruces
Journal:  J Bacteriol       Date:  1969-09       Impact factor: 3.490

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  9 in total

1.  Antimicrobial activities of Streptomyces pulcher, S. canescens and S. citreofluorescens against fungal and bacterial pathogens of tomato in vitro.

Authors:  M S el-Abyad; M A el-Sayed; A R el-Shanshoury; S M el-Sabbagh
Journal:  Folia Microbiol (Praha)       Date:  1996       Impact factor: 2.099

2.  Thermal stability of homologous and heterologous bacterial DNA duplexes.

Authors:  W H Crombach
Journal:  Antonie Van Leeuwenhoek       Date:  1974       Impact factor: 2.271

3.  Homologies of repetitive DNA sequences among Crustacea.

Authors:  D E Graham; D M Skinner
Journal:  Chromosoma       Date:  1973       Impact factor: 4.316

4.  Quantization of chloroplast DNA using dot blot filter hybridization with double-stranded probes.

Authors:  M A Smith
Journal:  Mol Cell Biochem       Date:  1984-09       Impact factor: 3.396

5.  DNA sequence similarity, cell wall mannans and physiological characteristics in some strains of Candida utilis, Hansenula jadinii and Hansenula petersonii.

Authors:  P L Manachini
Journal:  Antonie Van Leeuwenhoek       Date:  1979       Impact factor: 2.271

6.  Phenotypic characterization and deoxyribonucleic acid homologies of Pseudomonas solanacearum.

Authors:  N J Palleroni; M Doudoroff
Journal:  J Bacteriol       Date:  1971-09       Impact factor: 3.490

7.  Relationships among mycobacteria and nocardiae based upon deoxyribonucleic acid reassociation.

Authors:  S G Bradley
Journal:  J Bacteriol       Date:  1973-02       Impact factor: 3.490

8.  Cytological and deoxyribonucleic acid-deoxyribonucleic acid hybridization studies on lactobacillus isolates from San Francisco sourdough.

Authors:  N Sriranganathan; R J Seidler; W E Sandine; P R Elliker
Journal:  Appl Microbiol       Date:  1973-03

9.  Relatedness among Rhizobium and Agrobacterium species determined by three methods of nucleic acid hybridization.

Authors:  A M Gibbins; K F Gregory
Journal:  J Bacteriol       Date:  1972-07       Impact factor: 3.490

  9 in total

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