Literature DB >> 16556842

The effect of oxygen on biochemical networks and the evolution of complex life.

Jason Raymond1, Daniel Segrè.   

Abstract

The evolution of oxygenic photosynthesis and ensuing oxygenation of Earth's atmosphere represent a major transition in the history of life. Although many organisms retreated to anoxic environments, others evolved to use oxygen as a high-potential redox couple while concomitantly mitigating its toxicity. To understand the changes in biochemistry and enzymology that accompanied adaptation to O2, we integrated network analysis with information on enzyme evolution to infer how oxygen availability changed the architecture of metabolic networks. Our analysis revealed the existence of four discrete groups of networks of increasing complexity, with transitions between groups being contingent on the presence of key metabolites, including molecular oxygen, which was required for transition into the largest networks.

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Year:  2006        PMID: 16556842     DOI: 10.1126/science.1118439

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  140 in total

1.  Differential expression of the Chlamydomonas [FeFe]-hydrogenase-encoding HYDA1 gene is regulated by the copper response regulator1.

Authors:  Miriam Pape; Camilla Lambertz; Thomas Happe; Anja Hemschemeier
Journal:  Plant Physiol       Date:  2012-06-05       Impact factor: 8.340

2.  IGERS: inferring Gibbs energy changes of biochemical reactions from reaction similarities.

Authors:  Kristian Rother; Sabrina Hoffmann; Sascha Bulik; Andreas Hoppe; Johann Gasteiger; Herrmann-Georg Holzhütter
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

Review 3.  Degradation of damaged proteins: the main function of the 20S proteasome.

Authors:  Andrew M Pickering; Kelvin J A Davies
Journal:  Prog Mol Biol Transl Sci       Date:  2012       Impact factor: 3.622

Review 4.  Oxygen levels and the regulation of cell adhesion in the nervous system: a control point for morphogenesis in development, disease and evolution?

Authors:  Kathryn L Crossin
Journal:  Cell Adh Migr       Date:  2012 Jan-Feb       Impact factor: 3.405

5.  Modern proteomes contain putative imprints of ancient shifts in trace metal geochemistry.

Authors:  Christopher L Dupont; Song Yang; Brian Palenik; Philip E Bourne
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-10       Impact factor: 11.205

Review 6.  Biochemical Underpinnings of Immune Cell Metabolic Phenotypes.

Authors:  Benjamin A Olenchock; Jeffrey C Rathmell; Matthew G Vander Heiden
Journal:  Immunity       Date:  2017-05-16       Impact factor: 31.745

7.  Topological signatures of species interactions in metabolic networks.

Authors:  Elhanan Borenstein; Marcus W Feldman
Journal:  J Comput Biol       Date:  2009-02       Impact factor: 1.479

Review 8.  Integrative approaches for finding modular structure in biological networks.

Authors:  Koyel Mitra; Anne-Ruxandra Carvunis; Sanath Kumar Ramesh; Trey Ideker
Journal:  Nat Rev Genet       Date:  2013-10       Impact factor: 53.242

Review 9.  Reduced physical activity and risk of chronic disease: the biology behind the consequences.

Authors:  Frank W Booth; Matthew J Laye; Simon J Lees; R Scott Rector; John P Thyfault
Journal:  Eur J Appl Physiol       Date:  2007-11-07       Impact factor: 3.078

Review 10.  ROS homeostasis during development: an evolutionary conserved strategy.

Authors:  Jos H M Schippers; Hung M Nguyen; Dandan Lu; Romy Schmidt; Bernd Mueller-Roeber
Journal:  Cell Mol Life Sci       Date:  2012-07-28       Impact factor: 9.261

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