Literature DB >> 16554811

Human chromosome 11 DNA sequence and analysis including novel gene identification.

Todd D Taylor1, Hideki Noguchi, Yasushi Totoki, Atsushi Toyoda, Yoko Kuroki, Ken Dewar, Christine Lloyd, Takehiko Itoh, Tadayuki Takeda, Dae-Won Kim, Xinwei She, Karen F Barlow, Toby Bloom, Elspeth Bruford, Jean L Chang, Christina A Cuomo, Evan Eichler, Michael G FitzGerald, David B Jaffe, Kurt LaButti, Robert Nicol, Hong-Seog Park, Christopher Seaman, Carrie Sougnez, Xiaoping Yang, Andrew R Zimmer, Michael C Zody, Bruce W Birren, Chad Nusbaum, Asao Fujiyama, Masahira Hattori, Jane Rogers, Eric S Lander, Yoshiyuki Sakaki.   

Abstract

Chromosome 11, although average in size, is one of the most gene- and disease-rich chromosomes in the human genome. Initial gene annotation indicates an average gene density of 11.6 genes per megabase, including 1,524 protein-coding genes, some of which were identified using novel methods, and 765 pseudogenes. One-quarter of the protein-coding genes shows overlap with other genes. Of the 856 olfactory receptor genes in the human genome, more than 40% are located in 28 single- and multi-gene clusters along this chromosome. Out of the 171 disorders currently attributed to the chromosome, 86 remain for which the underlying molecular basis is not yet known, including several mendelian traits, cancer and susceptibility loci. The high-quality data presented here--nearly 134.5 million base pairs representing 99.8% coverage of the euchromatic sequence--provide scientists with a solid foundation for understanding the genetic basis of these disorders and other biological phenomena.

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Year:  2006        PMID: 16554811     DOI: 10.1038/nature04632

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  35 in total

1.  The implications of alternative splicing in the ENCODE protein complement.

Authors:  Michael L Tress; Pier Luigi Martelli; Adam Frankish; Gabrielle A Reeves; Jan Jaap Wesselink; Corin Yeats; Páll Isólfur Olason; Mario Albrecht; Hedi Hegyi; Alejandro Giorgetti; Domenico Raimondo; Julien Lagarde; Roman A Laskowski; Gonzalo López; Michael I Sadowski; James D Watson; Piero Fariselli; Ivan Rossi; Alinda Nagy; Wang Kai; Zenia Størling; Massimiliano Orsini; Yassen Assenov; Hagen Blankenburg; Carola Huthmacher; Fidel Ramírez; Andreas Schlicker; France Denoeud; Phil Jones; Samuel Kerrien; Sandra Orchard; Stylianos E Antonarakis; Alexandre Reymond; Ewan Birney; Søren Brunak; Rita Casadio; Roderic Guigo; Jennifer Harrow; Henning Hermjakob; David T Jones; Thomas Lengauer; Christine A Orengo; László Patthy; Janet M Thornton; Anna Tramontano; Alfonso Valencia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-19       Impact factor: 11.205

2.  A code for transcription initiation in mammalian genomes.

Authors:  Martin C Frith; Eivind Valen; Anders Krogh; Yoshihide Hayashizaki; Piero Carninci; Albin Sandelin
Journal:  Genome Res       Date:  2007-11-21       Impact factor: 9.043

3.  Chromosomal abnormalities in products of conception of first-trimester miscarriages detected by conventional cytogenetic analysis: a review of 1000 cases.

Authors:  Larysa Y Pylyp; Lyudmyla O Spynenko; Nataliya V Verhoglyad; Anna O Mishenko; Dmytro O Mykytenko; Valery D Zukin
Journal:  J Assist Reprod Genet       Date:  2017-10-30       Impact factor: 3.412

4.  Allele-specific distribution of RNA polymerase II on female X chromosomes.

Authors:  Katerina S Kucera; Timothy E Reddy; Florencia Pauli; Jason Gertz; Jenae E Logan; Richard M Myers; Huntington F Willard
Journal:  Hum Mol Genet       Date:  2011-07-26       Impact factor: 6.150

Review 5.  IGSF9 family proteins.

Authors:  Maria Hansen; Peter Schledermann Walmod
Journal:  Neurochem Res       Date:  2013-02-16       Impact factor: 3.996

6.  An expanded clade of rodent Trim5 genes.

Authors:  Semih U Tareen; Sara L Sawyer; Harmit S Malik; Michael Emerman
Journal:  Virology       Date:  2009-01-15       Impact factor: 3.616

7.  Diversification of TOLLIP isoforms in mouse and man.

Authors:  Yu-Lan S Lo; Anthony G Beckhouse; Sharon L Boulus; Christine A Wells
Journal:  Mamm Genome       Date:  2009-05-15       Impact factor: 2.957

8.  Hepatitis B virus and Homo sapiens proteome-wide analysis: A profusion of viral peptide overlaps in neuron-specific human proteins.

Authors:  Rosalia Ricco; Darja Kanduc
Journal:  Biologics       Date:  2010-05-25

9.  Expression of conjoined genes: another mechanism for gene regulation in eukaryotes.

Authors:  Tulika Prakash; Vineet K Sharma; Naoki Adati; Ritsuko Ozawa; Naveen Kumar; Yuichiro Nishida; Takayoshi Fujikake; Tadayuki Takeda; Todd D Taylor
Journal:  PLoS One       Date:  2010-10-12       Impact factor: 3.240

10.  Anti-proliferative action of vitamin D in MCF7 is still active after siRNA-VDR knock-down.

Authors:  José L Costa; Paul P Eijk; Mark A van de Wiel; Derk ten Berge; Fernando Schmitt; Carmen J Narvaez; JoEllen Welsh; Bauke Ylstra
Journal:  BMC Genomics       Date:  2009-10-28       Impact factor: 3.969

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