Literature DB >> 16551659

DRTF: a database of rice transcription factors.

Ge Gao1, Yingfu Zhong, Anyuan Guo, Qihui Zhu, Wen Tang, Weimou Zheng, Xiaocheng Gu, Liping Wei, Jingchu Luo.   

Abstract

SUMMARY: DRTF contains 2025 putative transcription factors (TFs) in Oryza sativa L. ssp. indica and 2384 in ssp. japonica, distributed in 63 families, identified by computational prediction and manual curation. It includes detailed annotations of each TF including sequence features, functional domains, Gene Ontology assignment, chromosomal localization, EST and microarray expression information, as well as multiple sequence alignment of the DNA-binding domains for each TF family. The database can be browsed and searched with a user-friendly web interface. AVAILABILITY: DRTF is available at http://drtf.cbi.pku.edu.cn

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Year:  2006        PMID： 16551659     DOI： 10.1093/bioinformatics/btl107

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  75 in total

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Review 5.  Genomics and bioinformatics resources for crop improvement.

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6.  Mapping metabolic and transcript temporal switches during germination in rice highlights specific transcription factors and the role of RNA instability in the germination process.

Authors:  Katharine A Howell; Reena Narsai; Adam Carroll; Aneta Ivanova; Marc Lohse; Björn Usadel; A Harvey Millar; James Whelan
Journal:  Plant Physiol       Date:  2008-12-12       Impact factor: 8.340

7.  Physiological and transcriptome analysis of iron and phosphorus interaction in rice seedlings.

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Authors:  Isabelle Romeuf; Dominique Tessier; Mireille Dardevet; Gérard Branlard; Gilles Charmet; Catherine Ravel
Journal:  BMC Genomics       Date:  2010-03-18       Impact factor: 3.969

9.  In silico analysis of transcription factor repertoire and prediction of stress responsive transcription factors in soybean.

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10.  Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.

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Journal:  PLoS Genet       Date:  2009-11-20       Impact factor: 5.917
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