Literature DB >> 16549398

A unique recent origin of the allotetraploid species Arabidopsis suecica: Evidence from nuclear DNA markers.

Mattias Jakobsson1, Jenny Hagenblad, Simon Tavaré, Torbjörn Säll, Christer Halldén, Christina Lind-Halldén, Magnus Nordborg.   

Abstract

A coalescent-based method was used to investigate the origins of the allotetraploid Arabidopsis suecica, using 52 nuclear microsatellite loci typed in eight individuals of A. suecica and 14 individuals of its maternal parent Arabidopsis thaliana, and four short fragments of genomic DNA sequenced in a sample of four individuals of A. suecica and in both its parental species A. thaliana and Arabidopsis arenosa. All loci were variable in A. thaliana but only 24 of the 52 microsatellite loci and none of the four sequence fragments were variable in A. suecica. We explore a number of possible evolutionary scenarios for A. suecica and conclude that it is likely that A. suecica has a recent, unique origin between 12,000 and 300,000 years ago. The time estimates depend strongly on what is assumed about population growth and rates of mutation. When combined with what is known about the history of glaciations, our results suggest that A. suecica originated south of its present distribution in Sweden and Finland and then migrated north, perhaps in the wake of the retreating ice.

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Year:  2006        PMID: 16549398     DOI: 10.1093/molbev/msk006

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  49 in total

1.  The evolutionary history of the Arabidopsis lyrata complex: a hybrid in the amphi-Beringian area closes a large distribution gap and builds up a genetic barrier.

Authors:  Roswitha Schmickl; Marte H Jørgensen; Anne K Brysting; Marcus A Koch
Journal:  BMC Evol Biol       Date:  2010-04-08       Impact factor: 3.260

2.  Progress and Promise in using Arabidopsis to Study Adaptation, Divergence, and Speciation.

Authors:  Ben Hunter; Kirsten Bomblies
Journal:  Arabidopsis Book       Date:  2010-09-29

Review 3.  Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids.

Authors:  Z Jeffrey Chen
Journal:  Annu Rev Plant Biol       Date:  2007       Impact factor: 26.379

Review 4.  Interspecies regulation of microRNAs and their targets.

Authors:  Misook Ha; Mingxiong Pang; Vikram Agarwal; Z Jeffrey Chen
Journal:  Biochim Biophys Acta       Date:  2008-03-25

Review 5.  The timetable for allopolyploidy in flowering plants.

Authors:  Donald A Levin
Journal:  Ann Bot       Date:  2013-08-21       Impact factor: 4.357

6.  Diversity and endemism in deglaciated areas: ploidy, relative genome size and niche differentiation in the Galium pusillum complex (Rubiaceae) in Northern and Central Europe.

Authors:  Filip Kolár; Magdalena Lucanová; Petr Vít; Tomás Urfus; Jindrich Chrtek; Tomás Fér; Friedrich Ehrendorfer; Jan Suda
Journal:  Ann Bot       Date:  2013-04-14       Impact factor: 4.357

7.  Cis- and trans-regulatory divergence between progenitor species determines gene-expression novelty in Arabidopsis allopolyploids.

Authors:  Xiaoli Shi; Danny W-K Ng; Changqing Zhang; Luca Comai; Wenxue Ye; Z Jeffrey Chen
Journal:  Nat Commun       Date:  2012-07-17       Impact factor: 14.919

Review 8.  Arabidopsis and relatives as models for the study of genetic and genomic incompatibilities.

Authors:  Kirsten Bomblies; Detlef Weigel
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-06-12       Impact factor: 6.237

Review 9.  Molecular mechanisms of polyploidy and hybrid vigor.

Authors:  Z Jeffrey Chen
Journal:  Trends Plant Sci       Date:  2010-01-18       Impact factor: 18.313

10.  The BOY NAMED SUE quantitative trait locus confers increased meiotic stability to an adapted natural allopolyploid of Arabidopsis.

Authors:  Isabelle M Henry; Brian P Dilkes; Anand Tyagi; Jian Gao; Brian Christensen; Luca Comai
Journal:  Plant Cell       Date:  2014-01-24       Impact factor: 11.277

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