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Literature DB >> 16547103

A second-generation integrated map of the silkworm reveals synteny and conserved gene order between lepidopteran insects.

Yuji Yasukochi¹, Laksmikutty A Ashakumary, Kotaro Baba, Atsuo Yoshido, Ken Sahara.

Abstract

A second-generation linkage map was constructed for the silkworm, Bombyx mori, focusing on mapping Bombyx sequences appearing in public nucleotide databases and bacterial artificial chromosome (BAC) contigs. A total of 874 BAC contigs containing 5067 clones (22% of the library) were constructed by PCR-based screening with sequence-tagged sites (STSs) derived from whole-genome shotgun (WGS) sequences. A total of 523 BAC contigs, including 342 independent genes registered in public databases and 85 expressed sequence tags (ESTs), were placed onto the linkage map. We found significant synteny and conserved gene order between B. mori and a nymphalid butterfly, Heliconius melpomene, in four linkage groups (LGs), strongly suggesting that using B. mori as a reference for comparative genomics in Lepidotera is highly feasible.

Entities: Species

Mesh：

Substances：
Genetic Markers

Year: 2006 PMID： 16547103 PMCID： PMC1526672 DOI： 10.1534/genetics.106.055541

Source DB: PubMed Journal: Genetics ISSN： 0016-6731 Impact factor: 4.562

21 in total

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Journal: Genetics Date: 2005-03-31 Impact factor: 4.562

5. Organization of the Hox gene cluster of the silkworm, Bombyx mori: a split of the Hox cluster in a non-Drosophila insect.

Authors: Yuji Yasukochi; Laksmikutty A Ashakumary; Chengcang Wu; Atsuo Yoshido; Junko Nohata; Kazuei Mita; Ken Sahara
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10. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.

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28 in total

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4. A rearrangement of the Z chromosome topology influences the sex-linked gene display in the European corn borer, Ostrinia nubilalis.

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5. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta.

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Journal: Insect Biochem Mol Biol Date: 2016-08-12 Impact factor: 4.714

6. Isolation of BAC clones containing conserved genes from libraries of three distantly related moths: a useful resource for comparative genomics of Lepidoptera.

Authors: Yuji Yasukochi; Makiko Tanaka-Okuyama; Manabu Kamimura; Ryo Nakano; Yota Naito; Yukio Ishikawa; Ken Sahara
Journal: J Biomed Biotechnol Date: 2010-11-25

7. Extensive conserved synteny of genes between the karyotypes of Manduca sexta and Bombyx mori revealed by BAC-FISH mapping.

Authors: Yuji Yasukochi; Makiko Tanaka-Okuyama; Fukashi Shibata; Atsuo Yoshido; Frantisek Marec; Chengcang Wu; Hongbin Zhang; Marian R Goldsmith; Ken Sahara
Journal: PLoS One Date: 2009-10-15 Impact factor: 3.240

8. Construction and sequence sampling of deep-coverage, large-insert BAC libraries for three model lepidopteran species.

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9. An integrated genetic linkage map for silkworms with three parental combinations and its application to the mapping of single genes and QTL.

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10. A gene-based linkage map for Bicyclus anynana butterflies allows for a comprehensive analysis of synteny with the lepidopteran reference genome.

Authors: Patrícia Beldade; Suzanne V Saenko; Nicolien Pul; Anthony D Long
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