Literature DB >> 16535676

A New Sensitive, Whole-Cell Hybridization Technique for Detection of Bacteria Involving a Biotinylated Oligonucleotide Probe Targeting rRNA and Tyramide Signal Amplification.

P Lebaron, P Catala, C Fajon, F Joux, J Baudart, L Bernard.   

Abstract

A tyramide signal amplification system with biotinylated oligonucleotide probes and streptavidin-horseradish peroxidase was used to increase the sensitivity of fluorescent in situ hybridization techniques. When applied to both gram-negative and -positive bacteria immobilized on glass slides, a 7- to 12-fold amplification of the fluorescence signal was observed relative to that of cells hybridized with fluorescently monolabeled probes. A large proportion (62 to 78%) of bacteria could be detected under starvation conditions and in natural samples from the marine environment. This amplification procedure allows new investigations in marine oligotrophic ecosystems and water quality control.

Entities:  

Year:  1997        PMID: 16535676      PMCID: PMC1389231          DOI: 10.1128/aem.63.8.3274-3278.1997

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  12 in total

1.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Authors:  R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

2.  Improved sensitivity of whole-cell hybridization by the combination of horseradish peroxidase-labeled oligonucleotides and tyramide signal amplification.

Authors:  W Schönhuber; B Fuchs; S Juretschko; R Amann
Journal:  Appl Environ Microbiol       Date:  1997-08       Impact factor: 4.792

3.  Estimating the growth rate of slowly growing marine bacteria from RNA content.

Authors:  P F Kemp; S Lee; J Laroche
Journal:  Appl Environ Microbiol       Date:  1993-08       Impact factor: 4.792

Review 4.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

5.  Identification of single bacterial cells using digoxigenin-labelled, rRNA-targeted oligonucleotides.

Authors:  B Zarda; R Amann; G Wallner; K H Schleifer
Journal:  J Gen Microbiol       Date:  1991-12

6.  Detection of specific bacterial cells with 2-hydroxy-3-naphthoic acid-2'-phenylanilide phosphate and fast red TR in situ hybridization.

Authors:  N Yamaguchi; S Inaoka; K Tani; T Kenzaka; M Nasu
Journal:  Appl Environ Microbiol       Date:  1996-01       Impact factor: 4.792

7.  In situ identification of bacteria in drinking water and adjoining biofilms by hybridization with 16S and 23S rRNA-directed fluorescent oligonucleotide probes.

Authors:  W Manz; U Szewzyk; P Ericsson; R Amann; K H Schleifer; T A Stenström
Journal:  Appl Environ Microbiol       Date:  1993-07       Impact factor: 4.792

8.  Community analysis of the bacterial assemblages in the winter cover and pelagic layers of a high mountain lake by in situ hybridization.

Authors:  A Alfreider; J Pernthaler; R Amann; B Sattler; F Glockner; A Wille; R Psenner
Journal:  Appl Environ Microbiol       Date:  1996-06       Impact factor: 4.792

9.  Optimizing fluorescent in situ hybridization with rRNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms.

Authors:  G Wallner; R Amann; W Beisker
Journal:  Cytometry       Date:  1993

10.  Identification of individual prokaryotic cells by using enzyme-labeled, rRNA-targeted oligonucleotide probes.

Authors:  R I Amann; B Zarda; D A Stahl; K H Schleifer
Journal:  Appl Environ Microbiol       Date:  1992-09       Impact factor: 4.792

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  11 in total

1.  Quantitative assessment of picoeukaryotes in the natural environment by using taxon-specific oligonucleotide probes in association with tyramide signal amplification-fluorescence in situ hybridization and flow cytometry.

Authors:  Isabelle C Biegala; Fabrice Not; Daniel Vaulot; Nathalie Simon
Journal:  Appl Environ Microbiol       Date:  2003-09       Impact factor: 4.792

2.  rRNA sequence-based scanning electron microscopic detection of bacteria.

Authors:  Takehiko Kenzaka; Ai Ishidoshiro; Nobuyasu Yamaguchi; Katsuji Tani; Masao Nasu
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

Review 3.  Fate of heterotrophic microbes in pelagic habitats: focus on populations.

Authors:  Jakob Pernthaler; Rudolf Amann
Journal:  Microbiol Mol Biol Rev       Date:  2005-09       Impact factor: 11.056

Review 4.  Enumeration of methanogens with a focus on fluorescence in situ hybridization.

Authors:  Sanjay Kumar; Sumit Singh Dagar; Ashok Kumar Mohanty; Sunil Kumar Sirohi; Monica Puniya; Ramesh C Kuhad; K P S Sangu; Gareth Wyn Griffith; Anil Kumar Puniya
Journal:  Naturwissenschaften       Date:  2011-04-08

5.  Comparison of blue nucleic acid dyes for flow cytometric enumeration of bacteria in aquatic systems.

Authors:  P Lebaron; N Parthuisot; P Catala
Journal:  Appl Environ Microbiol       Date:  1998-05       Impact factor: 4.792

6.  Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria.

Authors:  Annelie Pernthaler; Jakob Pernthaler; Rudolf Amann
Journal:  Appl Environ Microbiol       Date:  2002-06       Impact factor: 4.792

7.  High-temperature fluorescent in situ hybridization for detecting Escherichia coli in seawater samples, using rRNA-targeted oligonucleotide probes and flow cytometry.

Authors:  Ying Zhong Tang; Karina Yew Hoong Gin; Tok Hoon Lim
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

8.  Rapid and sensitive quantification of Vibrio cholerae and Vibrio mimicus cells in water samples by use of catalyzed reporter deposition fluorescence in situ hybridization combined with solid-phase cytometry.

Authors:  Sonja Schauer; Regina Sommer; Andreas H Farnleitner; Alexander K T Kirschner
Journal:  Appl Environ Microbiol       Date:  2012-08-10       Impact factor: 4.792

9.  Quantification of target molecules needed to detect microorganisms by fluorescence in situ hybridization (FISH) and catalyzed reporter deposition-FISH.

Authors:  Tatsuhiko Hoshino; L Safak Yilmaz; Daniel R Noguera; Holger Daims; Michael Wagner
Journal:  Appl Environ Microbiol       Date:  2008-06-13       Impact factor: 4.792

10.  Detection of bacteria carrying the stx2 gene by in situ loop-mediated isothermal amplification.

Authors:  Fumito Maruyama; Takehiko Kenzaka; Nobuyasu Yamaguchi; Katsuji Tani; Masao Nasu
Journal:  Appl Environ Microbiol       Date:  2003-08       Impact factor: 4.792

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