Literature DB >> 16530870

Methodological improvements of pyrosequencing technology.

Baback Gharizadeh1, Michael Akhras, Nader Nourizad, Mehran Ghaderi, Kenji Yasuda, Pål Nyrén, Nader Pourmand.   

Abstract

Pyrosequencing technology is a rather novel DNA sequencing method based on the sequencing-by-synthesis principle. This bioluminometric, real-time DNA sequencing technique employs a cascade of four enzymatic reactions producing sequence peak signals. The method has been proven highly suitable for single nucleotide polymorphism analysis and sequencing of short stretches of DNA. Although the pyrosequencing procedure is relatively straightforward, users may face challenges due to varying parameters in PCR and sequencing primer design, sample preparation and nucleotide dispensation; such challenges are labor and cost intensive. In this study, these issues have been addressed to increase signal quality and assure sequence accuracy.

Entities:  

Mesh:

Year:  2006        PMID: 16530870      PMCID: PMC2933062          DOI: 10.1016/j.jbiotec.2006.01.025

Source DB:  PubMed          Journal:  J Biotechnol        ISSN: 0168-1656            Impact factor:   3.307


  21 in total

1.  Direct analysis of single-nucleotide polymorphism on double-stranded DNA by pyrosequencing.

Authors:  T Nordström; M Ronaghi; L Forsberg; U de Faire; R Morgenstern; P Nyrén
Journal:  Biotechnol Appl Biochem       Date:  2000-04       Impact factor: 2.431

2.  Single-nucleotide polymorphism analysis by pyrosequencing.

Authors:  A Ahmadian; B Gharizadeh; A C Gustafsson; F Sterky; P Nyrén; M Uhlén; J Lundeberg
Journal:  Anal Biochem       Date:  2000-04-10       Impact factor: 3.365

3.  Analysis of the p53 tumor suppressor gene by pyrosequencing.

Authors:  A Ahmadian; J Lundeberg; P Nyrén; M Uhlén; M Ronaghi
Journal:  Biotechniques       Date:  2000-01       Impact factor: 1.993

4.  Pyrosequencing trade mark technology at elevated temperature.

Authors:  Jonas Eriksson; Baback Gharizadeh; Tommy Nordström; Pål Nyrén
Journal:  Electrophoresis       Date:  2004-01       Impact factor: 3.535

5.  Identification of medically important fungi by the Pyrosequencing technology.

Authors:  B Gharizadeh; E Norberg; J Löffler; S Jalal; J Tollemar; H Einsele; L Klingspor; P Nyrén
Journal:  Mycoses       Date:  2004-02       Impact factor: 4.377

6.  A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements.

Authors:  Allen S Yang; Marcos R H Estécio; Ketan Doshi; Yutaka Kondo; Eloiza H Tajara; Jean-Pierre J Issa
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

7.  Type-specific multiple sequencing primers: a novel strategy for reliable and rapid genotyping of human papillomaviruses by pyrosequencing technology.

Authors:  Baback Gharizadeh; Maria Oggionni; Biying Zheng; Edit Akom; Nader Pourmand; Afshin Ahmadian; Keng-Ling Wallin; Pål Nyrén
Journal:  J Mol Diagn       Date:  2005-05       Impact factor: 5.568

8.  Multiple group-specific sequencing primers for reliable and rapid DNA sequencing.

Authors:  Baback Gharizadeh; Andreas Ohlin; Paula Mölling; Anders Bäckman; Bahram Amini; Per Olcén; Pål Nyrén
Journal:  Mol Cell Probes       Date:  2003-08       Impact factor: 2.365

9.  A sequencing method based on real-time pyrophosphate.

Authors:  M Ronaghi; M Uhlén; P Nyrén
Journal:  Science       Date:  1998-07-17       Impact factor: 47.728

10.  Analyses of secondary structures in DNA by pyrosequencing.

Authors:  M Ronaghi; M Nygren; J Lundeberg; P Nyrén
Journal:  Anal Biochem       Date:  1999-02-01       Impact factor: 3.365

View more
  11 in total

1.  Giant magnetoresistive biochip for DNA detection and HPV genotyping.

Authors:  Liang Xu; Heng Yu; Michael S Akhras; Shu-Jen Han; Sebastian Osterfeld; Robert L White; Nader Pourmand; Shan X Wang
Journal:  Biosens Bioelectron       Date:  2008-04-08       Impact factor: 10.618

2.  Template tailoring: Accurate determination of heterozygous alleles using peptide nucleic acid and dideoxyNTP.

Authors:  Muhammad Akram Tariq; Nader Pourmand
Journal:  Electrophoresis       Date:  2010-04       Impact factor: 3.535

3.  Direct oligonucleotide synthesis onto super-paramagnetic beads.

Authors:  Michael A Jensen; Michael S Akhras; Marilyn Fukushima; Nader Pourmand; Ron W Davis
Journal:  J Biotechnol       Date:  2013-08-11       Impact factor: 3.307

4.  PathogenMip assay: a multiplex pathogen detection assay.

Authors:  Michael S Akhras; Sreedevi Thiyagarajan; Andrea C Villablanca; Ronald W Davis; Pål Nyrén; Nader Pourmand
Journal:  PLoS One       Date:  2007-02-21       Impact factor: 3.240

5.  The Identification and Differentiation between Burkholderia mallei and Burkholderia pseudomallei Using One Gene Pyrosequencing.

Authors:  Damian H Gilling; Vicki Ann Luna; Cori Pflugradt
Journal:  Int Sch Res Notices       Date:  2014-10-02

6.  Epigenetic DNA Methylation Linked to Social Dominance.

Authors:  Kapa Lenkov; Mi H Lee; Olga D Lenkov; Andrew Swafford; Russell D Fernald
Journal:  PLoS One       Date:  2015-12-30       Impact factor: 3.240

7.  Whole genome survey of coding SNPs reveals a reproducible pathway determinant of Parkinson disease.

Authors:  Balaji S Srinivasan; Jaleh Doostzadeh; Farnaz Absalan; Sharareh Mohandessi; Roxana Jalili; Saharnaz Bigdeli; Justin Wang; Jaydev Mahadevan; Caroline L G Lee; Ronald W Davis; J William Langston; Mostafa Ronaghi
Journal:  Hum Mutat       Date:  2009-02       Impact factor: 4.878

8.  Determination of quantitative and site-specific DNA methylation of perforin by pyrosequencing.

Authors:  Supraja Narasimhan; Virginia R Falkenberg; Maung M Khin; Mangalathu S Rajeevan
Journal:  BMC Res Notes       Date:  2009-06-12

9.  Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications.

Authors:  Michael S Akhras; Magnus Unemo; Sreedevi Thiyagarajan; Pål Nyrén; Ronald W Davis; Andrew Z Fire; Nader Pourmand
Journal:  PLoS One       Date:  2007-09-19       Impact factor: 3.240

10.  High throughput automated allele frequency estimation by pyrosequencing.

Authors:  Julie Doostzadeh; Shadi Shokralla; Farnaz Absalan; Roxana Jalili; Sharareh Mohandessi; James W Langston; Ronald W Davis; Mostafa Ronaghi; Baback Gharizadeh
Journal:  PLoS One       Date:  2008-07-16       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.