Literature DB >> 16528915

Liquid Tissue: proteomic profiling of formalin-fixed tissues.

DaRue A Prieto1, Brian L Hood, Marlene M Darfler, Thomas G Guiel, David A Lucas, Thomas P Conrads, Timothy D Veenstra, David B Krizman.   

Abstract

Identification and quantitation of candidate biomarker proteins in large numbers of individual tissues is required to validate specific proteins, or panels of proteins, for clinical use as diagnostic, prognostic, toxicological, or therapeutic markers. Mass spectrometry (MS) provides an exciting analytical methodology for this purpose. Liquid Tissue MS protein preparation allows researchers to utilize the vast, already existing, collections offormalin-fixed paraffin-embedded (FFPE) tissues for the procurement of peptides and the analysis across a variety of MS platforms.

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Year:  2005        PMID: 16528915     DOI: 10.2144/05386su06

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  32 in total

Review 1.  Antigen retrieval immunohistochemistry: review and future prospects in research and diagnosis over two decades.

Authors:  Shan-Rong Shi; Yan Shi; Clive R Taylor
Journal:  J Histochem Cytochem       Date:  2011-01       Impact factor: 2.479

2.  Improving the Proteomic Analysis of Archival Tissue by Using Pressure-Assisted Protein Extraction: A Mechanistic Approach.

Authors:  Carol B Fowler; Timothy J O'Leary; Jeffrey T Mason
Journal:  J Proteomics Bioinform       Date:  2014-06-24

3.  Quantitative Proteomic Analysis of Optimal Cutting Temperature (OCT) Embedded Core-Needle Biopsy of Lung Cancer.

Authors:  Xiaozheng Zhao; Kenneth E Huffman; Junya Fujimoto; Jamie Rodriguez Canales; Luc Girard; Guangjun Nie; John V Heymach; Igacio I Wistuba; John D Minna; Yonghao Yu
Journal:  J Am Soc Mass Spectrom       Date:  2017-07-27       Impact factor: 3.109

4.  Formalin-Fixed, Paraffin-Embedded Tissues (FFPE) as a Robust Source for the Profiling of Native and Protease-Generated Protein Amino Termini.

Authors:  Zon Weng Lai; Juliane Weisser; Lars Nilse; Fabrizio Costa; Eva Keller; Martina Tholen; Jayachandran N Kizhakkedathu; Martin Biniossek; Peter Bronsert; Oliver Schilling
Journal:  Mol Cell Proteomics       Date:  2016-04-17       Impact factor: 5.911

5.  Elevated pressure improves the extraction and identification of proteins recovered from formalin-fixed, paraffin-embedded tissue surrogates.

Authors:  Carol B Fowler; Ingrid E Chesnick; Cedric D Moore; Timothy J O'Leary; Jeffrey T Mason
Journal:  PLoS One       Date:  2010-12-08       Impact factor: 3.240

6.  Optimized Protocol for Quantitative Multiple Reaction Monitoring-Based Proteomic Analysis of Formalin-Fixed, Paraffin-Embedded Tissues.

Authors:  Jacob J Kennedy; Jeffrey R Whiteaker; Regine M Schoenherr; Ping Yan; Kimberly Allison; Melissa Shipley; Melissa Lerch; Andrew N Hoofnagle; Geoffrey Stuart Baird; Amanda G Paulovich
Journal:  J Proteome Res       Date:  2016-07-27       Impact factor: 4.466

7.  Application of a global proteomic approach to archival precursor lesions: deleted in malignant brain tumors 1 and tissue transglutaminase 2 are upregulated in pancreatic cancer precursors.

Authors:  Wang Cheung; Marlene M Darfler; Hector Alvarez; Brian L Hood; Thomas P Conrads; Nils Habbe; David B Krizman; Jan Mollenhauer; Georg Feldmann; Anirban Maitra
Journal:  Pancreatology       Date:  2008-10-13       Impact factor: 3.996

8.  Proteomics on Fixed Tissue Specimens - A Review.

Authors:  Beth Ann Reimel; Sheng Pan; Damon H May; Scott A Shaffer; David R Goodlett; Martin W McIntosh; Lisa M Yerian; Mary P Bronner; Ru Chen; Teresa A Brentnall
Journal:  Curr Proteomics       Date:  2009-04-01       Impact factor: 0.837

9.  Protein extraction of formalin-fixed, paraffin-embedded tissue enables robust proteomic profiles by mass spectrometry.

Authors:  Marshall S Scicchitano; Deidre A Dalmas; Rogely W Boyce; Heath C Thomas; Kendall S Frazier
Journal:  J Histochem Cytochem       Date:  2009-05-26       Impact factor: 2.479

10.  Evaluation of archival time on shotgun proteomics of formalin-fixed and paraffin-embedded tissues.

Authors:  Brian M Balgley; Tong Guo; Kejia Zhao; Xueping Fang; Fattaneh A Tavassoli; Cheng S Lee
Journal:  J Proteome Res       Date:  2009-02       Impact factor: 4.466

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