Literature DB >> 16528465

A novel gene cluster soxSRT is essential for the chemolithotrophic oxidation of thiosulfate and tetrathionate by Pseudaminobacter salicylatoxidans KCT001.

Chandrajit Lahiri1, Sukhendu Mandal, Wriddhiman Ghosh, Bomba Dam, Pradosh Roy.   

Abstract

Chemolithotrophic sulfur oxidation (Sox) in the alpha-proteobacterium Pseudaminobacter salicylatoxidans KCT001 was found to be governed by the gene cluster soxSRT-soxVWXYZABCD. Independent transposon-insertion mutations in the genes soxB, soxC, soxD, and also in a novel open reading frame (ORF), designated as soxT, afforded revelation of the entire sox locus of this bacterium. The deduced amino acid sequence of the novel ORF soxT comprised 362 residues and exhibited significant homology with hypothetical proteins of diverse origin, including a permease-like transport protein of Escherichia coli. Two contiguous ORFs, soxR and soxS, immediately preceded the soxT gene. The gene cluster soxSRT was located upstream of soxVWXYZABCD and was transcribed divergently with respect to the latter. Chemolithotrophic utilization of both thiosulfate and tetrathionate was observed to have been impaired in all of these Sox- mutants, implicating the involvement of the gene cluster soxSRT-soxVWXYZABCD in the oxidation of both thiosulfate and tetrathionate.

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Year:  2006        PMID: 16528465     DOI: 10.1007/s00284-005-0176-x

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  19 in total

Review 1.  NPS@: network protein sequence analysis.

Authors:  C Combet; C Blanchet; C Geourjon; G Deléage
Journal:  Trends Biochem Sci       Date:  2000-03       Impact factor: 13.807

2.  EMBOSS: the European Molecular Biology Open Software Suite.

Authors:  P Rice; I Longden; A Bleasby
Journal:  Trends Genet       Date:  2000-06       Impact factor: 11.639

3.  Novel genes coding for lithotrophic sulfur oxidation of Paracoccus pantotrophus GB17.

Authors:  C G Friedrich; A Quentmeier; F Bardischewsky; D Rother; R Kraft; S Kostka; H Prinz
Journal:  J Bacteriol       Date:  2000-09       Impact factor: 3.490

4.  Novel genes of the sox gene cluster, mutagenesis of the flavoprotein SoxF, and evidence for a general sulfur-oxidizing system in Paracoccus pantotrophus GB17.

Authors:  D Rother; H J Henrich; A Quentmeier; F Bardischewsky; C G Friedrich
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

5.  Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110.

Authors:  Takakazu Kaneko; Yasukazu Nakamura; Shusei Sato; Kiwamu Minamisawa; Toshiki Uchiumi; Shigemi Sasamoto; Akiko Watanabe; Kumi Idesawa; Mayumi Iriguchi; Kumiko Kawashima; Mitsuyo Kohara; Midori Matsumoto; Sayaka Shimpo; Hisae Tsuruoka; Tsuyuko Wada; Manabu Yamada; Satoshi Tabata
Journal:  DNA Res       Date:  2002-12-31       Impact factor: 4.458

6.  CDD: a curated Entrez database of conserved domain alignments.

Authors:  Aron Marchler-Bauer; John B Anderson; Carol DeWeese-Scott; Natalie D Fedorova; Lewis Y Geer; Siqian He; David I Hurwitz; John D Jackson; Aviva R Jacobs; Christopher J Lanczycki; Cynthia A Liebert; Chunlei Liu; Thomas Madej; Gabriele H Marchler; Raja Mazumder; Anastasia N Nikolskaya; Anna R Panchenko; Bachoti S Rao; Benjamin A Shoemaker; Vahan Simonyan; James S Song; Paul A Thiessen; Sona Vasudevan; Yanli Wang; Roxanne A Yamashita; Jodie J Yin; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

7.  A possible mechanism for metal-ion induced DNA-protein dissociation in a family of prokaryotic transcriptional regulators.

Authors:  A Bairoch
Journal:  Nucleic Acids Res       Date:  1993-05-25       Impact factor: 16.971

8.  Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12.

Authors:  T Hayashi; K Makino; M Ohnishi; K Kurokawa; K Ishii; K Yokoyama; C G Han; E Ohtsubo; K Nakayama; T Murata; M Tanaka; T Tobe; T Iida; H Takami; T Honda; C Sasakawa; N Ogasawara; T Yasunaga; S Kuhara; T Shiba; M Hattori; H Shinagawa
Journal:  DNA Res       Date:  2001-02-28       Impact factor: 4.458

9.  The genetic basis of tetrathionate respiration in Salmonella typhimurium.

Authors:  M Hensel; A P Hinsley; T Nikolaus; G Sawers; B C Berks
Journal:  Mol Microbiol       Date:  1999-04       Impact factor: 3.501

10.  A soxA gene, encoding a diheme cytochrome c, and a sox locus, essential for sulfur oxidation in a new sulfur lithotrophic bacterium.

Authors:  P N Mukhopadhyaya; C Deb; C Lahiri; P Roy
Journal:  J Bacteriol       Date:  2000-08       Impact factor: 3.490

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  5 in total

1.  Whole-genome shotgun sequence of the sulfur-oxidizing chemoautotroph Pseudaminobacter salicylatoxidans KCT001.

Authors:  Masrure Alam; Chayan Roy; Prosenjit Pyne; Atima Agarwal; Ashish George; Wriddhiman Ghosh
Journal:  J Bacteriol       Date:  2012-09       Impact factor: 3.490

2.  The sulfur oxidation operon repressor function is influenced by the product of its adjacent upstream ORF in Pseudaminobacter salicylatoxidans KCT001.

Authors:  Sukhendu Mandal
Journal:  Curr Microbiol       Date:  2011-12-15       Impact factor: 2.188

3.  Taxonomic Re-Evaluation and Genomic Comparison of Novel Extracellular Electron Uptake-Capable Rhodovulum visakhapatnamense and Rhodovulum sulfidophilum Isolates.

Authors:  Emily J Davenport; Arpita Bose
Journal:  Microorganisms       Date:  2022-06-16

4.  Kinetic enrichment of 34S during proteobacterial thiosulfate oxidation and the conserved role of SoxB in S-S bond breaking.

Authors:  Masrure Alam; Prosenjit Pyne; Aninda Mazumdar; Aditya Peketi; Wriddhiman Ghosh
Journal:  Appl Environ Microbiol       Date:  2013-05-17       Impact factor: 4.792

5.  An Extracellular Tetrathionate Hydrolase from the Thermoacidophilic Archaeon Acidianus Ambivalens with an Activity Optimum at pH 1.

Authors:  Jonas Protze; Fabian Müller; Karin Lauber; Bastian Naß; Reinhard Mentele; Friedrich Lottspeich; Arnulf Kletzin
Journal:  Front Microbiol       Date:  2011-04-25       Impact factor: 5.640

  5 in total

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