Literature DB >> 16526744

Thermodynamic properties of weak acids involved in enzyme-catalyzed reactions.

Robert A Alberty1.   

Abstract

Measurements of apparent equilibrium constants and transformed enthalpies of enzyme-catalyzed reactions are making it possible to obtain delta(f)G degrees and delta(f)H degrees of species of biochemical reactants in dilute aqueous solution that could never have been determined classically. This article is concerned with the pKs that determine the pH dependencies of the standard transformed thermodynamic properties of biochemical reactants. The database BasicBiochemData3 makes it possible to calculate 82 pKs of 60 reactants as functions of ionic strength at 298.15 K. Standard enthalpies of formation of all the species are known for 27 of these reactants, and so their pKs can be calculated as functions of temperature and ionic strength. This article also presents calculations of delta(r)G degrees, delta(r)H degrees, and delta(r)S degrees at 298.15 K and three ionic strengths for the 42 pKs of these 27 reactants.

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Year:  2006        PMID: 16526744     DOI: 10.1021/jp0545086

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Changes in binding of hydrogen ions in enzyme-catalyzed reactions.

Authors:  Robert A Alberty
Journal:  Biophys Chem       Date:  2006-10-02       Impact factor: 2.352

2.  A database of thermodynamic quantities for the reactions of glycolysis and the tricarboxylic acid cycle.

Authors:  X Li; R K Dash; R K Pradhan; F Qi; M Thompson; K C Vinnakota; F Wu; F Yang; D A Beard
Journal:  J Phys Chem B       Date:  2010-05-06       Impact factor: 2.991

3.  pH-dependent uptake of fumaric acid in Saccharomyces cerevisiae under anaerobic conditions.

Authors:  Elaheh Jamalzadeh; Peter J T Verheijen; Joseph J Heijnen; Walter M van Gulik
Journal:  Appl Environ Microbiol       Date:  2011-11-23       Impact factor: 4.792

4.  A database of thermodynamic properties of the reactions of glycolysis, the tricarboxylic acid cycle, and the pentose phosphate pathway.

Authors:  Xin Li; Fan Wu; Feng Qi; Daniel A Beard
Journal:  Database (Oxford)       Date:  2011-04-11       Impact factor: 3.451

  4 in total

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