Literature DB >> 16522219

Shuffling bacterial metabolomes.

Brendan Thomason1, Timothy D Read.   

Abstract

Horizontal gene transfer (HGT) has a far more significant role than gene duplication in bacterial evolution. This has recently been illustrated by work demonstrating the importance of HGT in the emergence of bacterial metabolic networks, with horizontally acquired genes being placed in peripheral pathways at the outer branches of the networks.

Entities:  

Mesh:

Year:  2006        PMID: 16522219      PMCID: PMC1431723          DOI: 10.1186/gb-2006-7-2-204

Source DB:  PubMed          Journal:  Genome Biol        ISSN: 1474-7596            Impact factor:   13.583


  16 in total

1.  Lateral genomics.

Authors:  W F Doolittle
Journal:  Trends Cell Biol       Date:  1999-12       Impact factor: 20.808

Review 2.  Horizontal gene transfer in prokaryotes: quantification and classification.

Authors:  E V Koonin; K S Makarova; L Aravind
Journal:  Annu Rev Microbiol       Date:  2001       Impact factor: 15.500

3.  Flux coupling analysis of genome-scale metabolic network reconstructions.

Authors:  Anthony P Burgard; Evgeni V Nikolaev; Christophe H Schilling; Costas D Maranas
Journal:  Genome Res       Date:  2004-01-12       Impact factor: 9.043

4.  Prokaryotic evolution in light of gene transfer.

Authors:  J Peter Gogarten; W Ford Doolittle; Jeffrey G Lawrence
Journal:  Mol Biol Evol       Date:  2002-12       Impact factor: 16.240

Review 5.  Horizontal gene transfer: a critical view.

Authors:  C G Kurland; B Canback; Otto G Berg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-05       Impact factor: 11.205

6.  Only a small subset of the horizontally transferred chromosomal genes in Escherichia coli are translated into proteins.

Authors:  Masato Taoka; Yoshio Yamauchi; Takashi Shinkawa; Hiroyuki Kaji; Wakana Motohashi; Hiroshi Nakayama; Nobuhiro Takahashi; Toshiaki Isobe
Journal:  Mol Cell Proteomics       Date:  2004-04-28       Impact factor: 5.911

Review 7.  Genome-scale models of microbial cells: evaluating the consequences of constraints.

Authors:  Nathan D Price; Jennifer L Reed; Bernhard Ø Palsson
Journal:  Nat Rev Microbiol       Date:  2004-11       Impact factor: 60.633

8.  Massive gene decay in the leprosy bacillus.

Authors:  S T Cole; K Eiglmeier; J Parkhill; K D James; N R Thomson; P R Wheeler; N Honoré; T Garnier; C Churcher; D Harris; K Mungall; D Basham; D Brown; T Chillingworth; R Connor; R M Davies; K Devlin; S Duthoy; T Feltwell; A Fraser; N Hamlin; S Holroyd; T Hornsby; K Jagels; C Lacroix; J Maclean; S Moule; L Murphy; K Oliver; M A Quail; M A Rajandream; K M Rutherford; S Rutter; K Seeger; S Simon; M Simmonds; J Skelton; R Squares; S Squares; K Stevens; K Taylor; S Whitehead; J R Woodward; B G Barrell
Journal:  Nature       Date:  2001-02-22       Impact factor: 49.962

9.  Genome sequence of Yersinia pestis, the causative agent of plague.

Authors:  J Parkhill; B W Wren; N R Thomson; R W Titball; M T Holden; M B Prentice; M Sebaihia; K D James; C Churcher; K L Mungall; S Baker; D Basham; S D Bentley; K Brooks; A M Cerdeño-Tárraga; T Chillingworth; A Cronin; R M Davies; P Davis; G Dougan; T Feltwell; N Hamlin; S Holroyd; K Jagels; A V Karlyshev; S Leather; S Moule; P C Oyston; M Quail; K Rutherford; M Simmonds; J Skelton; K Stevens; S Whitehead; B G Barrell
Journal:  Nature       Date:  2001-10-04       Impact factor: 49.962

10.  Evidence of a large novel gene pool associated with prokaryotic genomic islands.

Authors:  William W L Hsiao; Korine Ung; Dana Aeschliman; Jenny Bryan; B Brett Finlay; Fiona S L Brinkman
Journal:  PLoS Genet       Date:  2005-11-18       Impact factor: 5.917

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  3 in total

Review 1.  Lateral genetic transfer: open issues.

Authors:  Mark A Ragan; Robert G Beiko
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2009-08-12       Impact factor: 6.237

2.  Genomic and phenotypic diversity of coastal Vibrio cholerae strains is linked to environmental factors.

Authors:  Daniel P Keymer; Michael C Miller; Gary K Schoolnik; Alexandria B Boehm
Journal:  Appl Environ Microbiol       Date:  2007-04-20       Impact factor: 4.792

3.  The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes.

Authors:  John W Whitaker; Glenn A McConkey; David R Westhead
Journal:  Genome Biol       Date:  2009-04-15       Impact factor: 13.583

  3 in total

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