Literature DB >> 16519518

Phosphomevalonate kinase: functional investigation of the recombinant human enzyme.

Timothy J Herdendorf1, Henry M Miziorko.   

Abstract

Phosphomevalonate kinase (PMK) catalyzes a key step in isoprenoid/sterol biosynthesis, converting mevalonate 5-phosphate and ATP to mevalonate 5-diphosphate and ADP. To expedite functional and structural study of this enzyme, an expression plasmid encoding His-tagged human PMK has been constructed and recombinant enzyme isolated in an active, stable form. PMK catalyzes a reversible reaction; kinetic constants of human PMK have been determined for both forward (formation of mevalonate 5-diphosphate) and reverse (formation of mevalonate 5-phosphate) reactions. Animal and invertebrate PMKs are not orthologous to plant, fungal, or bacterial PMKs, limiting the information available from sequence alignment analysis. A homology model for the structure of human PMK has been generated. The model conforms to a nucleoside monophosphate kinase family fold. This result, together with sequence comparisons of animal and invertebrate PMKs, suggests an N-terminal basic residue rich sequence as a possible "Walker A" ATP binding motif. The functions of four basic (K17, R18, K19, K22) residues and one acidic (D23) residue in the conserved sequence have been tested by mutagenesis and characterization of isolated mutant proteins. Substrate K(m) values for K17M, R18Q, K19M, and D23N have been measured for forward and reverse reactions; in comparison with wild-type PMK values, only modest (<12-fold) changes are observed. In contrast, R18Q exhibits a V(max) decrease of 100/300-fold (forward/reverse reaction). K22M activity is too low for measurement at nonsaturating substrate concentration; specific activity is decreased by >10000-fold in both forward/reverse reactions, suggesting an active site location and an important role in phosphoryl transfer.

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Year:  2006        PMID: 16519518     DOI: 10.1021/bi052231u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  NMR dynamics investigation of ligand-induced changes of main and side-chain arginine N-H's in human phosphomevalonate kinase.

Authors:  Andrew L Olson; Sheng Cai; Timothy J Herdendorf; Henry M Miziorko; Daniel S Sem
Journal:  J Am Chem Soc       Date:  2010-02-24       Impact factor: 15.419

2.  Molecular docking and NMR binding studies to identify novel inhibitors of human phosphomevalonate kinase.

Authors:  Pornthip Boonsri; Terrence S Neumann; Andrew L Olson; Sheng Cai; Timothy J Herdendorf; Henry M Miziorko; Supa Hannongbua; Daniel S Sem
Journal:  Biochem Biophys Res Commun       Date:  2012-11-10       Impact factor: 3.575

Review 3.  Enzymes of the mevalonate pathway of isoprenoid biosynthesis.

Authors:  Henry M Miziorko
Journal:  Arch Biochem Biophys       Date:  2010-10-07       Impact factor: 4.013

4.  Human mevalonate diphosphate decarboxylase: characterization, investigation of the mevalonate diphosphate binding site, and crystal structure.

Authors:  Natalia E Voynova; Zhuji Fu; Kevin P Battaile; Timothy J Herdendorf; Jung-Ja P Kim; Henry M Miziorko
Journal:  Arch Biochem Biophys       Date:  2008-09-18       Impact factor: 4.013

5.  Substrate induced structural and dynamics changes in human phosphomevalonate kinase and implications for mechanism.

Authors:  Andrew L Olson; Huili Yao; Timothy J Herdendorf; Henry M Miziorko; Supa Hannongbua; Patchareenart Saparpakorn; Sheng Cai; Daniel S Sem
Journal:  Proteins       Date:  2009-04

6.  Functional evaluation of conserved basic residues in human phosphomevalonate kinase.

Authors:  Timothy J Herdendorf; Henry M Miziorko
Journal:  Biochemistry       Date:  2007-09-29       Impact factor: 3.162

7.  Role of the NC-loop in catalytic activity and stability in lipase from Fervidobacterium changbaicum.

Authors:  Binchun Li; Guangyu Yang; Lie Wu; Yan Feng
Journal:  PLoS One       Date:  2012-10-08       Impact factor: 3.240

8.  Functional diversity of genes for the biosynthesis of paeoniflorin and its derivatives in Paeonia.

Authors:  Yuan Yuan; Jun Yu; Chao Jiang; Minhui Li; Shufang Lin; Xumin Wang; Luqi Huang
Journal:  Int J Mol Sci       Date:  2013-09-09       Impact factor: 5.923

9.  Transcriptome exploration of the sex pheromone gland of Lutzomyia longipalpis (Diptera: Psychodidae: Phlebotominae).

Authors:  Natalia González-Caballero; Jesus G Valenzuela; José M C Ribeiro; Patricia Cuervo; Reginaldo P Brazil
Journal:  Parasit Vectors       Date:  2013-03-07       Impact factor: 3.876

Review 10.  Phylogenomic investigation of phospholipid synthesis in archaea.

Authors:  Jonathan Lombard; Purificación López-García; David Moreira
Journal:  Archaea       Date:  2012-12-16       Impact factor: 3.273

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