Literature DB >> 16515533

Functional role of catalytic triad and oxyanion hole-forming residues on enzyme activity of Escherichia coli thioesterase I/protease I/phospholipase L1.

Li-Chiun Lee1, Ya-Lin Lee, Ruey-Jyh Leu, Jei-Fu Shaw.   

Abstract

Escherichia coli TAP (thioesterase I, EC 3.1.2.2) is a multifunctional enzyme with thioesterase, esterase, arylesterase, protease and lysophospholipase activities. Previous crystal structural analyses identified its essential amino acid residues as those that form a catalytic triad (Ser10-Asp154-His157) and those involved in forming an oxyanion hole (Ser10-Gly44-Asn73). To gain an insight into the biochemical roles of each residue, site-directed mutagenesis was employed to mutate these residues to alanine, and enzyme kinetic studies were conducted using esterase, thioesterase and amino-acid-derived substrates. Of the residues, His157 is the most important, as it plays a vital role in the catalytic triad, and may also play a role in stabilizing oxyanion conformation. Ser10 also plays a very important role, although the small residual activity of the S10A variant suggests that a water molecule may act as a poor substitute. The water molecule could possibly be endowed with the nucleophilic-attacking character by His157 hydrogen-bonding. Asp154 is not as essential compared with the other two residues in the triad. It is close to the entrance of the substrate tunnel, therefore it predominantly affects substrate accessibility. Gly44 plays a role in stabilizing the oxyanion intermediate and additionally in acyl-enzyme-intermediate transformation. N73A had the highest residual enzyme activity among all the mutants, which indicates that Asn73 is not as essential as the other mutated residues. The role of Asn73 is proposed to be involved in a loop75-80 switch-move motion, which is essential for the accommodation of substrates with longer acyl-chain lengths.

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Year:  2006        PMID: 16515533      PMCID: PMC1479741          DOI: 10.1042/BJ20051645

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  23 in total

1.  Studies on enzymes involved in the catabolism of phospholipids in Escherichia coli.

Authors:  F R Albright; D A White; W J Lennarz
Journal:  J Biol Chem       Date:  1973-06-10       Impact factor: 5.157

2.  Molecular cloning, sequencing, and mapping of the gene encoding protease I and characterization of proteinase and proteinase-defective Escherichia coli mutants.

Authors:  S Ichihara; Y Matsubara; C Kato; K Akasaka; S Mizushima
Journal:  J Bacteriol       Date:  1993-02       Impact factor: 3.490

3.  Activity staining of nucleolytic enzymes after sodium dodecyl sulfate-polyacrylamide gel electrophoresis: use of aqueous isopropanol to remove detergent from gels.

Authors:  A Blank; R H Sugiyama; C A Dekker
Journal:  Anal Biochem       Date:  1982-03-01       Impact factor: 3.365

4.  Isolation and some propeties of a proteolytic enzyme from Escherichia coli (protease I).

Authors:  M Pacaud; J Uriel
Journal:  Eur J Biochem       Date:  1971-12-10

5.  Lysophospholipase of Escherichia coli.

Authors:  O Doi; S Nojima
Journal:  J Biol Chem       Date:  1975-07-10       Impact factor: 5.157

6.  Substrate specificities of Escherichia coli thioesterase I/protease I/lysophospholipase L1 are governed by its switch loop movement.

Authors:  Yu-Chih Lo; Su-Chang Lin; Jei-Fu Shaw; Yen-Chywan Liaw
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

7.  Crystal structure of Escherichia coli thioesterase I/protease I/lysophospholipase L1: consensus sequence blocks constitute the catalytic center of SGNH-hydrolases through a conserved hydrogen bond network.

Authors:  Yu-Chih Lo; Su-Chang Lin; Jei-Fu Shaw; Yen-Chywan Liaw
Journal:  J Mol Biol       Date:  2003-07-11       Impact factor: 5.469

8.  Protease I from Escherichia coli. Some physicochemical properties and substrate specificity.

Authors:  M Pacaud; S Sibilli; G Bras
Journal:  Eur J Biochem       Date:  1976-10-01

9.  Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme.

Authors:  H Cho; J E Cronan
Journal:  J Biol Chem       Date:  1993-05-05       Impact factor: 5.157

10.  Lysophospholipase L1 from Escherichia coli K-12 overproducer.

Authors:  K Karasawa; I Kudo; T Kobayashi; H Homma; N Chiba; H Mizushima; K Inoue; S Nojima
Journal:  J Biochem       Date:  1991-02       Impact factor: 3.387

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