Literature DB >> 16514047

Proposal to reclassify [Sphingomonas] xenophaga Stolz et al. 2000 and [Sphingomonas] taejonensis Lee et al. 2001 as Sphingobium xenophagum comb. nov. and Sphingopyxis taejonensis comb. nov., respectively.

Rinku Pal1, V K Bhasin1, Rup Lal1.   

Abstract

The sphingomonad group contains bacterial isolates that are quite diverse in terms of their phylogenetic, ecological and physiological properties. Thus, the genus Sphingomonas was divided into four distinct genera, Sphingomonas sensu stricto, Sphingobium, Novosphingobium and Sphingopyxis on the basis of 16S rRNA gene sequence phylogenetic analysis, signature nucleotides, fatty acid profiles and polyamine patterns and this classification is currently widely accepted. In this study, a complete analysis of the 16S rRNA gene sequences of all the members of the group of sphingomonads encompassed in the genera Sphingomonas sensu stricto, Sphingobium, Novosphingobium and Sphingopyxis was inferred by using tree-making algorithms. [Sphingomonas] xenophaga DSM 6383T was found to form a distinct clade with the members of the genus Sphingobium, whereas [Sphingomonas] taejonensis DSM 15583T forms a clade with the members of the genus Sphingopyxis. The respective positions of these strains were also supported by the data for signature nucleotides, 2-hydroxy fatty acid profiles, polyamine patterns and the nitrate reduction properties of the strains. We therefore propose the reclassification of [Sphingomonas] xenophaga and [Sphingomonas] taejonensis as Sphingobium xenophagum comb. nov. (type strain DSM 6383T = CIP 107206T) and Sphingopyxis taejonensis comb. nov. (type strain DSM 15583T = KCTC 2884T = KCCM 41068T), respectively.

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Year:  2006        PMID: 16514047     DOI: 10.1099/ijs.0.64161-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  6 in total

1.  Pacificamonas flava gen. nov., sp. nov., a novel member of the family Sphingomonadaceae isolated from the Southeastern Pacific.

Authors:  Keshao Liu; Shuhui Li; Nianzhi Jiao; Kai Tang
Journal:  Curr Microbiol       Date:  2014-03-16       Impact factor: 2.188

2.  Effects of di- and polysaccharide formulations and storage conditions on survival of freeze-dried Sphingobium sp.

Authors:  Karin Onneby; Leticia Pizzul; Joakim Bjerketorp; Denny Mahlin; Sebastian Håkansson; Per Wessman
Journal:  World J Microbiol Biotechnol       Date:  2013-03-10       Impact factor: 3.312

3.  Elucidation of the ipso-substitution mechanism for side-chain cleavage of alpha-quaternary 4-nonylphenols and 4-t-butoxyphenol in Sphingobium xenophagum Bayram.

Authors:  Frédéric L P Gabriel; Maike Cyris; Niels Jonkers; Walter Giger; Klaus Guenther; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

4.  Novosphingobium aromaticivorans uses a Nu-class glutathione S-transferase as a glutathione lyase in breaking the β-aryl ether bond of lignin.

Authors:  Wayne S Kontur; Craig A Bingman; Charles N Olmsted; Douglas R Wassarman; Arne Ulbrich; Daniel L Gall; Robert W Smith; Larissa M Yusko; Brian G Fox; Daniel R Noguera; Joshua J Coon; Timothy J Donohue
Journal:  J Biol Chem       Date:  2018-02-15       Impact factor: 5.157

5.  Draft Genome Sequence of the Plant Growth-Promoting Sphingobium sp. Strain AEW4, Isolated from the Rhizosphere of the Beachgrass Ammophila breviligulata.

Authors:  Abanoub E Wanees; Shari J Zaslow; Savannah J Potter; Brandon P Hsieh; Brianna L Boss; Javier A Izquierdo
Journal:  Genome Announc       Date:  2018-05-24

6.  Isolation and characterization of a novel Sphingobium yanoikuyae strain variant that uses biohazardous saturated hydrocarbons and aromatic compounds as sole carbon sources.

Authors:  Mautusi Mitra; Kevin Manoap-Anh-Khoa Nguyen; Taylor Wayland Box; Jesse Scott Gilpin; Seth Ryan Hamby; Taylor Lynne Berry; Erin Harper Duckett
Journal:  F1000Res       Date:  2020-07-24
  6 in total

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