Literature DB >> 16512783

Using expanded genetic alphabets to simplify high-throughput genetic testing.

James R Prudent1.   

Abstract

DNA is the only chemistry that allows for molecular recognition on demand. Unlike any other molecular recognition chemistry, DNA enables the simple design and rapid synthesis of molecule sets that will recognize each other and self-assemble into nanostructures. In molecular diagnostics, DNA is used to capture complementary sequences in order to decode complex mixes. Expanding DNA chemistry to include additional base pairs enables a more precise manipulation of nanostructures constructed with DNA. MultiCode technology is that type of expanded DNA chemistry. The technology exploits DNA hydrogen bonding patterns that differ from natural DNA, thereby enabling a simple means of transcending problems that are otherwise unsolvable. Made up of additional base pairs (not simply single bases), MultiCode technology is used today to decode sequences in an orthogonal manner to natural DNA. This review will discuss MultiCode technology and specifically focus on how the technology can be used to build molecular testing platforms.

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Year:  2006        PMID: 16512783     DOI: 10.1586/14737159.6.2.245

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  9 in total

1.  Validation of a microsphere-based immunoassay for detection of anti-West Nile virus and anti-St. Louis encephalitis virus immunoglobulin m antibodies.

Authors:  Alison J Johnson; Ronald C Cheshier; Giorgio Cosentino; Heather P Masri; Valerie Mock; Rebecca Oesterle; Robert S Lanciotti; Denise A Martin; Amanda J Panella; Olga Kosoy; Brad J Biggerstaff
Journal:  Clin Vaccine Immunol       Date:  2007-07-03

2.  Evaluation of a multiplexed PCR assay for detection of respiratory viral pathogens in a public health laboratory setting.

Authors:  David J Marshall; Erik Reisdorf; Gerda Harms; Edward Beaty; Michael J Moser; Wai-Ming Lee; James E Gern; Frederick S Nolte; Pete Shult; James R Prudent
Journal:  J Clin Microbiol       Date:  2007-10-10       Impact factor: 5.948

3.  Highly sensitive and quantitative detection of the H274Y oseltamivir resistance mutation in seasonal A/H1N1 influenza virus.

Authors:  Darwin J Operario; Michael J Moser; Kirsten St George
Journal:  J Clin Microbiol       Date:  2010-07-28       Impact factor: 5.948

4.  Structure and replication of yDNA: a novel genetic set widened by benzo-homologation.

Authors:  Haige Lu; Stephen R Lynch; Alex H F Lee; Eric T Kool
Journal:  Chembiochem       Date:  2009-10-12       Impact factor: 3.164

5.  Effects of mismatching for minor histocompatibility antigens on clinical outcomes in HLA-matched, unrelated hematopoietic stem cell transplants.

Authors:  Stephen Spellman; Melissa B Warden; Michael Haagenson; Bradley C Pietz; Els Goulmy; Edus H Warren; Tao Wang; Thomas M Ellis
Journal:  Biol Blood Marrow Transplant       Date:  2009-07       Impact factor: 5.742

6.  Discovery, characterization, and optimization of an unnatural base pair for expansion of the genetic alphabet.

Authors:  Aaron M Leconte; Gil Tae Hwang; Shigeo Matsuda; Petr Capek; Yoshiyuki Hari; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2008-01-25       Impact factor: 15.419

7.  MultiCode-PLx system for multiplexed detection of seventeen respiratory viruses.

Authors:  Frederick S Nolte; David J Marshall; Christopher Rasberry; Sabina Schievelbein; Grier G Banks; Gregory A Storch; Max Q Arens; Richard S Buller; James R Prudent
Journal:  J Clin Microbiol       Date:  2007-06-27       Impact factor: 5.948

8.  Optimization of an unnatural base pair toward natural-like replication.

Authors:  Young Jun Seo; Gil Tae Hwang; Phillip Ordoukhanian; Floyd E Romesberg
Journal:  J Am Chem Soc       Date:  2009-03-11       Impact factor: 15.419

9.  Highly specific unnatural base pair systems as a third base pair for PCR amplification.

Authors:  Rie Yamashige; Michiko Kimoto; Yusuke Takezawa; Akira Sato; Tsuneo Mitsui; Shigeyuki Yokoyama; Ichiro Hirao
Journal:  Nucleic Acids Res       Date:  2011-11-24       Impact factor: 16.971

  9 in total

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