Literature DB >> 16511285

Overexpression, crystallization and preliminary X-ray crystallographic analysis of erythronate-4-phosphate dehydrogenase from Pseudomonas aeruginosa.

Jun Yong Ha1, Ji Hyun Lee, Kyoung Hoon Kim, Do Jin Kim, Hyung Ho Lee, Hye-Kyung Kim, Hye-Jin Yoon, Se Won Suh.   

Abstract

The enzyme erythronate-4-phosphate dehydrogenase catalyses the conversion of erythronate-4-phosphate to 3-hydroxy-4-phospho-hydroxy-alpha-ketobutyrate. It belongs to the D-isomer-specific 2-hydroxyacid dehydrogenase family. It is essential for de novo biosynthesis of vitamin B6 (pyridoxine). Erythronate-4-phosphate dehydrogenase from Pseudomonas aeruginosa, a homodimeric enzyme consisting of two identical 380-residue subunits, has been overexpressed in Escherichia coli with a C-terminal purification tag and crystallized at 297 K using 0.7 M ammonium dihydrogen phosphate, 0.4 M ammonium tartrate, 0.1 M sodium citrate pH 5.6 and 10 mM cupric chloride. X-ray diffraction data were collected to 2.20 A from a crystal grown in the presence of NADH. The crystals belong to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 84.77, b = 101.28, c = 142.58 A. A dimeric molecule is present in the asymmetric unit, giving a crystal volume per protein weight (VM) of 3.64 A3 Da(-1) and a solvent content of 66%.

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Year:  2006        PMID: 16511285      PMCID: PMC2150941          DOI: 10.1107/S1744309106000649

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  Physical and enzymological interaction of Bacillus subtilis proteins required for de novo pyridoxal 5'-phosphate biosynthesis.

Authors:  Boris R Belitsky
Journal:  J Bacteriol       Date:  2004-02       Impact factor: 3.490

2.  Evolution of vitamin B6 (pyridoxine) metabolism by gain and loss of genes.

Authors:  Tsuyoshi Tanaka; Yoshio Tateno; Takashi Gojobori
Journal:  Mol Biol Evol       Date:  2004-10-13       Impact factor: 16.240

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Analysis of the vitamin B6 biosynthesis pathway in the human malaria parasite Plasmodium falciparum.

Authors:  Carsten Wrenger; Marie-Luise Eschbach; Ingrid B Müller; Dirk Warnecke; Rolf D Walter
Journal:  J Biol Chem       Date:  2004-12-07       Impact factor: 5.157

Review 5.  Pyridoxine 5'-phosphate synthase: de novo synthesis of vitamin B6 and beyond.

Authors:  Marta Garrido-Franco
Journal:  Biochim Biophys Acta       Date:  2003-04-11

Review 6.  Structure and mechanism of Escherichia coli pyridoxine 5'-phosphate oxidase.

Authors:  Martino L di Salvo; Martin K Safo; Faik N Musayev; Francesco Bossa; Verne Schirch
Journal:  Biochim Biophys Acta       Date:  2003-04-11

7.  Identification of highly conserved genes: SNZ and SNO in the marine sponge Suberites domuncula: their gene structure and promoter activity in mammalian cells(1).

Authors:  J Seack; S Perovic; V Gamulin; H C Schröder; P Beutelmann; I M Müller; W E Müller
Journal:  Biochim Biophys Acta       Date:  2001-07-30

8.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

Review 9.  Over-production of proteins in Escherichia coli: mutant hosts that allow synthesis of some membrane proteins and globular proteins at high levels.

Authors:  B Miroux; J E Walker
Journal:  J Mol Biol       Date:  1996-07-19       Impact factor: 5.469

10.  Biosynthesis of vitamin B6: direct identification of the product of the PdxA-catalyzed oxidation of 4-hydroxy-l-threonine-4-phosphate using electrospray ionization mass spectrometry.

Authors:  Jerel Banks; David E Cane
Journal:  Bioorg Med Chem Lett       Date:  2004-04-05       Impact factor: 2.823

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