Literature DB >> 16511281

Crystallization and preliminary crystallographic analysis of the catechol 2,3-dioxygenase PheB from Bacillus stearothermophilus BR219.

Keisuke Sugimoto1, Kazuki Matsufuzi, Hiroaki Ohnuma, Miki Senda, Masao Fukuda, Toshiya Senda.   

Abstract

Class II extradiol-cleaving catecholic dioxygenase, a key enzyme of aromatic compound degradation in bacteria, cleaves the aromatic ring of catechol by adding two O atoms. PheB is one of the class II extradiol-cleaving catecholic dioxygenases and shows a high substrate specificity for catechol derivatives, which have one aromatic ring. In order to reveal the mechanism of the substrate specificity of PheB, PheB has been crystallized by the hanging-drop vapour-diffusion method using PEG 4000 as a precipitant. The space group of the obtained crystal was P2(1)2(1)2(1), with unit-cell parameters a = 65.5, b = 119.2, c = 158.7 A. The crystal diffracted to 2.3 A resolution.

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Year:  2006        PMID: 16511281      PMCID: PMC2150948          DOI: 10.1107/S174430910504323X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  13 in total

1.  Geometric and electronic structure/function correlations in non-heme iron enzymes.

Authors:  E I Solomon; T C Brunold; M I Davis; J N Kemsley; S K Lee; N Lehnert; F Neese; A J Skulan; Y S Yang; J Zhou
Journal:  Chem Rev       Date:  2000-01-12       Impact factor: 60.622

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

Review 3.  Dioxygen activation at mononuclear nonheme iron active sites: enzymes, models, and intermediates.

Authors:  Miquel Costas; Mark P Mehn; Michael P Jensen; Lawrence Que
Journal:  Chem Rev       Date:  2004-02       Impact factor: 60.622

4.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  An archetypical extradiol-cleaving catecholic dioxygenase: the crystal structure of catechol 2,3-dioxygenase (metapyrocatechase) from Ppseudomonas putida mt-2.

Authors:  A Kita; S Kita; I Fujisawa; K Inaka; T Ishida; K Horiike; M Nozaki; K Miki
Journal:  Structure       Date:  1999-01-15       Impact factor: 5.006

6.  Cloning and sequencing of two tandem genes involved in degradation of 2,3-dihydroxybiphenyl to benzoic acid in the polychlorinated biphenyl-degrading soil bacterium Pseudomonas sp. strain KKS102.

Authors:  K Kimbara; T Hashimoto; M Fukuda; T Koana; M Takagi; M Oishi; K Yano
Journal:  J Bacteriol       Date:  1989-05       Impact factor: 3.490

7.  Crystal structures of the reaction intermediate and its homologue of an extradiol-cleaving catecholic dioxygenase.

Authors:  Nobuyuki Sato; Yoshitaka Uragami; Tomoko Nishizaki; Yoshito Takahashi; Gen Sazaki; Keisuke Sugimoto; Takamasa Nonaka; Eiji Masai; Masao Fukuda; Toshiya Senda
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

8.  Complete nucleotide sequence of the metapyrocatechase gene on the TOI plasmid of Pseudomonas putida mt-2.

Authors:  C Nakai; H Kagamiyama; M Nozaki; T Nakazawa; S Inouye; Y Ebina; A Nakazawa
Journal:  J Biol Chem       Date:  1983-03-10       Impact factor: 5.157

9.  The role of the conserved residues His-246, His-199, and Tyr-255 in the catalysis of catechol 2,3-dioxygenase from Pseudomonas stutzeri OX1.

Authors:  Ambra Viggiani; Loredana Siani; Eugenio Notomista; Leila Birolo; Piero Pucci; Alberto Di Donato
Journal:  J Biol Chem       Date:  2004-09-04       Impact factor: 5.157

10.  Crystal structure of the biphenyl-cleaving extradiol dioxygenase from a PCB-degrading pseudomonad.

Authors:  S Han; L D Eltis; K N Timmis; S W Muchmore; J T Bolin
Journal:  Science       Date:  1995-11-10       Impact factor: 47.728

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