Literature DB >> 16511259

Cloning, expression, purification, crystallization and initial crystallographic analysis of transcription elongation factors GreB from Escherichia coli and Gfh1 from Thermus thermophilus.

Anna A Perederina1, Marina N Vassylyeva, Igor A Berezin, Vladimir Svetlov, Irina Artsimovitch, Dmitry G Vassylyev.   

Abstract

The Escherichia coli gene encoding the transcription cleavage factor GreB and the Thermus thermophilus gene encoding the anti-GreA transcription factor Gfh1 were cloned and expressed and the purified proteins were crystallized by the sitting-drop vapor-diffusion technique. The GreB and Gfh1 crystals, which were improved by macroseeding, belong to space group P4(1)2(1)2 (or P4(3)2(1)2), with unit-cell parameters a = b = 148, c = 115.2 A and a = b = 59.3, c = 218.9 A, respectively. Complete diffraction data sets were collected for the GreB and Gfh1 crystals to 2.6 and 2.8 A resolution, respectively. Crystals of the selenomethionine proteins were obtained by microseeding using the native protein crystals and diffract as well as the native ones. The structure determination of these proteins is now in progress.

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Year:  2005        PMID: 16511259      PMCID: PMC1401493          DOI: 10.1107/S1744309105040297

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

1.  Function of transcription cleavage factors GreA and GreB at a regulatory pause site.

Authors:  M T Marr; J W Roberts
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

2.  Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase.

Authors:  Oleg Laptenko; Jookyung Lee; Ivan Lomakin; Sergei Borukhov
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

3.  Backtracking by single RNA polymerase molecules observed at near-base-pair resolution.

Authors:  Joshua W Shaevitz; Elio A Abbondanzieri; Robert Landick; Steven M Block
Journal:  Nature       Date:  2003-11-23       Impact factor: 49.962

4.  TFIIS and GreB: two like-minded transcription elongation factors with sticky fingers.

Authors:  Ronald C Conaway; Stephanie E Kong; Joan Weliky Conaway
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

5.  Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase.

Authors:  Natacha Opalka; Mark Chlenov; Pablo Chacon; William J Rice; Willy Wriggers; Seth A Darst
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

6.  Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage.

Authors:  Hubert Kettenberger; Karim-Jean Armache; Patrick Cramer
Journal:  Cell       Date:  2003-08-08       Impact factor: 41.582

Review 7.  Promoting elongation with transcript cleavage stimulatory factors.

Authors:  Rachel N Fish; Caroline M Kane
Journal:  Biochim Biophys Acta       Date:  2002-09-13

8.  GreA and GreB proteins revive backtracked RNA polymerase in vivo by promoting transcript trimming.

Authors:  F Toulmé; C Mosrin-Huaman; J Sparkowski; A Das; M Leng; A R Rahmouni
Journal:  EMBO J       Date:  2000-12-15       Impact factor: 11.598

9.  Transcript cleavage by Thermus thermophilus RNA polymerase. Effects of GreA and anti-GreA factors.

Authors:  Brian P Hogan; Thomas Hartsch; Dorothy A Erie
Journal:  J Biol Chem       Date:  2001-10-17       Impact factor: 5.157

10.  Donation of catalytic residues to RNA polymerase active center by transcription factor Gre.

Authors:  Ekaterina Sosunova; Vasily Sosunov; Maxim Kozlov; Vadim Nikiforov; Alex Goldfarb; Arkady Mustaev
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-10       Impact factor: 11.205

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  6 in total

1.  Two transcription pause elements underlie a σ70-dependent pause cycle.

Authors:  Eric J Strobel; Jeffrey W Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

2.  The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors.

Authors:  Marina N Vassylyeva; Vladimir Svetlov; Altaira D Dearborn; Sergiy Klyuyev; Irina Artsimovitch; Dmitry G Vassylyev
Journal:  EMBO Rep       Date:  2007-10-05       Impact factor: 8.807

3.  Regulation of promoter-proximal transcription elongation: enhanced DNA scrunching drives λQ antiterminator-dependent escape from a σ70-dependent pause.

Authors:  Eric J Strobel; Jeffrey W Roberts
Journal:  Nucleic Acids Res       Date:  2014-02-17       Impact factor: 16.971

4.  NusG inhibits RNA polymerase backtracking by stabilizing the minimal transcription bubble.

Authors:  Matti Turtola; Georgiy A Belogurov
Journal:  Elife       Date:  2016-10-04       Impact factor: 8.140

5.  Ribosome reactivates transcription by physically pushing RNA polymerase out of transcription arrest.

Authors:  Flint Stevenson-Jones; Jason Woodgate; Daniel Castro-Roa; Nikolay Zenkin
Journal:  Proc Natl Acad Sci U S A       Date:  2020-04-01       Impact factor: 11.205

6.  Oxazinomycin arrests RNA polymerase at the polythymidine sequences.

Authors:  Ranjit K Prajapati; Petja Rosenqvist; Kaisa Palmu; Janne J Mäkinen; Anssi M Malinen; Pasi Virta; Mikko Metsä-Ketelä; Georgiy A Belogurov
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

  6 in total

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