Literature DB >> 16511247

Atomic resolution structure of the double mutant (K53,56M) of bovine pancreatic phospholipase A2.

K Sekar1, M Yogavel, D Gayathri, D Velmurugan, R Krishna, M-J Poi, Z Dauter, M Dauter, M-D Tsai.   

Abstract

The structure of the double mutant K53,56M has previously been refined at 1.9 A resolution using room-temperature data. The present paper reports the crystal structure of the same mutant K53,56M refined against 1.1 A data collected using synchrotron radiation. A total of 116 main-chain atoms from 29 residues and 44 side chains are modelled in alternate conformations. Most of the interfacial binding residues are found to be disordered and alternate conformations could be recognized. The second calcium ion-binding site residue Glu92 adopts two alternate conformations. The minor and major conformations of Glu92 correspond to the second calcium ion bound and unbound states.

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Year:  2005        PMID: 16511247      PMCID: PMC2150930          DOI: 10.1107/S1744309105040984

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  26 in total

1.  Observation of additional calcium ion in the crystal structure of the triple mutant K56,120,121M of bovine pancreatic phospholipase A2.

Authors:  V Rajakannan; M Yogavel; Ming-Jye Poi; A Arockia Jeyaprakash; J Jeyakanthan; D Velmurugan; Ming-Daw Tsai; K Sekar
Journal:  J Mol Biol       Date:  2002-12-06       Impact factor: 5.469

2.  THE SUBSTRATE SPECIFICITY OF PHOSPHOLIPASE A.

Authors:  G H DE HAAS
Journal:  Biochim Biophys Acta       Date:  1963-10-22

3.  Stereochemistry of polypeptide chain configurations.

Authors:  G N RAMACHANDRAN; C RAMAKRISHNAN; V SASISEKHARAN
Journal:  J Mol Biol       Date:  1963-07       Impact factor: 5.469

4.  Refinement of macromolecular structures by the maximum-likelihood method.

Authors:  G N Murshudov; A A Vagin; E J Dodson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1997-05-01

5.  Terbium replacement of calcium in carp muscle calcium-binding parvalbumin: an x-ray crystallographic study.

Authors:  P C Moews; R H Kretsinger
Journal:  J Mol Biol       Date:  1975-01-15       Impact factor: 5.469

6.  High-resolution refinement of orthorhombic bovine pancreatic phospholipase A2.

Authors:  K Sekar; M Sundaralingam
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

7.  X-ray structure of bovine pancreatic phospholipase A2 at atomic resolution.

Authors:  R A Steiner; H J Rozeboom; A de Vries; K H Kalk; G N Murshudov; K S Wilson; B W Dijkstra
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-04

8.  The geometry of metal-ligand interactions relevant to proteins.

Authors:  M M Harding
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-08

9.  Structural basis of the anionic interface preference and kcat* activation of pancreatic phospholipase A2.

Authors:  B Z Yu; M J Poi; U A Ramagopal; R Jain; S Ramakumar; O G Berg; M D Tsai; K Sekar; M K Jain
Journal:  Biochemistry       Date:  2000-10-10       Impact factor: 3.162

10.  Crystal structures of the free and anisic acid bound triple mutant of phospholipase A2.

Authors:  K Sekar; S Vaijayanthi Mala; M Yogavel; D Velmurugan; Ming-Jye Poi; B S Vishwanath; T V Gowda; A Arokia Jeyaprakash; M-D Tsai
Journal:  J Mol Biol       Date:  2003-10-17       Impact factor: 5.469

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