Literature DB >> 16511219

Overexpression, purification and crystallization of tyrosyl-tRNA synthetase from the hyperthermophilic archaeon Aeropyrum pernix K1.

Jun Iwaki1, Ryuichiro Suzuki, Zui Fujimoto, Mitsuru Momma, Atsushi Kuno, Tsunemi Hasegawa.   

Abstract

Hyperthermophilic archaeal tyrosyl-tRNA synthetase from Aeropyrum pernix K1 was cloned and overexpressed in Escherichia coli. The expressed protein was purified by Cibacron Blue affinity chromatography following heat treatment at 363 K. Crystals suitable for X-ray diffraction studies were obtained under optimized crystallization conditions in the presence of 1.5 M ammonium sulfate using the hanging-drop vapour-diffusion method. The crystals belonged to the tetragonal space group P4(3)2(1)2, with unit-cell parameters a = b = 66.1, c = 196.2 A, and diffracted to beyond 2.15 A resolution at 100 K.

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Year:  2005        PMID: 16511219      PMCID: PMC1978129          DOI: 10.1107/S1744309105033245

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  15 in total

1.  Complete genome sequence of an aerobic hyper-thermophilic crenarchaeon, Aeropyrum pernix K1.

Authors:  Y Kawarabayasi; Y Hino; H Horikawa; S Yamazaki; Y Haikawa; K Jin-no; M Takahashi; M Sekine; S Baba; A Ankai; H Kosugi; A Hosoyama; S Fukui; Y Nagai; K Nishijima; H Nakazawa; M Takamiya; S Masuda; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; H Kikuchi
Journal:  DNA Res       Date:  1999-04-30       Impact factor: 4.458

2.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

3.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

4.  Identity of tRNA for yeast tyrosyl-tRNA synthetase: tyrosylation is more sensitive to identity nucleotides than to structural features.

Authors:  P Fechter; J Rudinger-Thirion; A Théobald-Dietrich; R Giegé
Journal:  Biochemistry       Date:  2000-02-22       Impact factor: 3.162

5.  A modified procedure for fast purification of T7 RNA polymerase.

Authors:  Y Li; E Wang; Y Wang
Journal:  Protein Expr Purif       Date:  1999-07       Impact factor: 1.650

6.  Major tyrosine identity determinants in Methanococcus jannaschii and Saccharomyces cerevisiae tRNA(Tyr) are conserved but expressed differently.

Authors:  P Fechter; J Rudinger-Thirion; M Tukalo; R Giegé
Journal:  Eur J Biochem       Date:  2001-02

7.  Competition of aminoacyl-tRNA synthetases for tRNA ensures the accuracy of aminoacylation.

Authors:  J M Sherman; M J Rogers; D Söll
Journal:  Nucleic Acids Res       Date:  1992-06-11       Impact factor: 16.971

8.  Structural basis for orthogonal tRNA specificities of tyrosyl-tRNA synthetases for genetic code expansion.

Authors:  Takatsugu Kobayashi; Osamu Nureki; Ryuichiro Ishitani; Anna Yaremchuk; Michael Tukalo; Stephen Cusack; Kensaku Sakamoto; Shigeyuki Yokoyama
Journal:  Nat Struct Biol       Date:  2003-06

9.  Class I tyrosyl-tRNA synthetase has a class II mode of cognate tRNA recognition.

Authors:  Anna Yaremchuk; Ivan Kriklivyi; Michael Tukalo; Stephen Cusack
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

10.  Expression, purification, and characterization of human tyrosyl-tRNA synthetase.

Authors:  Jie Jia; Bin Li; Youxin Jin; Debao Wang
Journal:  Protein Expr Purif       Date:  2003-01       Impact factor: 1.650

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  1 in total

1.  Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.

Authors:  Aron Szenes; Gábor Pál
Journal:  DNA Res       Date:  2012-02-28       Impact factor: 4.458

  1 in total

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