Literature DB >> 16511099

Crystallization and preliminary X-ray crystallographic analysis of Aart, a designed six-finger zinc-finger peptide, bound to DNA.

Justin W Crotty1, Christopher Etzkorn, Carlos F Barbas, David J Segal, Nancy C Horton.   

Abstract

Crystals of a designed six-finger zinc-finger protein, Aart, bound to a 22-base-pair duplex DNA containing a consensus binding site have been obtained. Crystals grew by hanging-drop vapor diffusion from solutions containing polyethylene glycol 4000 as the precipitating agent. The irregularly shaped crystals belong to space group P1, with unit-cell parameters a = 41.95, b = 71.76, c = 74.73 A, alpha = 100.87, beta = 96.22, gamma = 106.33 degrees . There are most likely to be two protein-DNA complexes in the asymmetric unit. A complete native data set has been collected from a high-energy synchrotron source to a resolution of 2.95 A at 100 K, with an Rmerge of 9.3%.

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Year:  2005        PMID: 16511099      PMCID: PMC1952332          DOI: 10.1107/S1744309105014363

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

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Authors:  M Nagaoka; T Kaji; M Imanishi; Y Hori; W Nomura; Y Sugiura
Journal:  Biochemistry       Date:  2001-03-06       Impact factor: 3.162

2.  Positive and negative regulation of endogenous genes by designed transcription factors.

Authors:  R R Beerli; B Dreier; C F Barbas
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

3.  Improved DNA binding specificity from polyzinc finger peptides by using strings of two-finger units.

Authors:  M Moore; A Klug; Y Choo
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

4.  Design of polyzinc finger peptides with structured linkers.

Authors:  M Moore; Y Choo; A Klug
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

5.  Molecular basis for modulation of biological function by alternate splicing of the Wilms' tumor suppressor protein.

Authors:  J H Laity; H J Dyson; P E Wright
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

6.  Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes.

Authors:  S A Wolfe; R A Grant; M Elrod-Erickson; C O Pabo
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

7.  Significant effect of linker sequence on DNA recognition by multi-zinc finger protein.

Authors:  M Nagaoka; W Nomura; Y Shiraishi; Y Sugiura
Journal:  Biochem Biophys Res Commun       Date:  2001-04-13       Impact factor: 3.575

8.  Development of zinc finger domains for recognition of the 5'-ANN-3' family of DNA sequences and their use in the construction of artificial transcription factors.

Authors:  B Dreier; R R Beerli; D J Segal; J D Flippin; C F Barbas
Journal:  J Biol Chem       Date:  2001-05-04       Impact factor: 5.157

9.  Evaluation of a modular strategy for the construction of novel polydactyl zinc finger DNA-binding proteins.

Authors:  David J Segal; Roger R Beerli; Pilar Blancafort; Birgit Dreier; Karin Effertz; Adrian Huber; Beate Koksch; Caren V Lund; Laurent Magnenat; David Valente; Carlos F Barbas
Journal:  Biochemistry       Date:  2003-02-25       Impact factor: 3.162

10.  Heritable endogenous gene regulation in plants with designed polydactyl zinc finger transcription factors.

Authors:  Xuen Guan; Justin Stege; Myoung Kim; Zina Dahmani; Nancy Fan; Peter Heifetz; Carlos F Barbas; Steven P Briggs
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-23       Impact factor: 11.205

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  1 in total

1.  Expression, purification and molecular analysis of the human ZNF706 protein.

Authors:  Jucimara Colombo; Paola Jocelan Scarin Provazzi; Marilia Freitas Calmon; Lilian Campos Pires; Nathália Campos Rodrigues; Paulo Petl; Marcelo Andrés Fossey; Fátima Pereira de Souza; Fernanda Canduri; Paula Rahal
Journal:  Biol Proced Online       Date:  2013-09-23       Impact factor: 3.244

  1 in total

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