Literature DB >> 16511092

Structure of Citrobacter freundii L-methionine gamma-lyase.

D V Mamaeva1, E A Morozova, A D Nikulin, S V Revtovich, S V Nikonov, M B Garber, T V Demidkina.   

Abstract

L-Methionine gamma-lyase (MGL) is a pyridoxal 5'-phosphate (PLP) dependent enzyme that catalyzes gamma-elimination of L-methionine. The crystal structure of MGL from Citrobacter freundii has been determined at 1.9 A resolution. The spatial fold of the protein is similar to those of MGLs from Pseudomonas putida and Trichomonas vaginalis. The comparison of these structures revealed that there are differences in PLP-binding residues and positioning of the surrounding flexible loops.

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Year:  2005        PMID: 16511092      PMCID: PMC1952331          DOI: 10.1107/S1744309105015447

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  12 in total

1.  Crystal structure of diaminopelargonic acid synthase: evolutionary relationships between pyridoxal-5'-phosphate-dependent enzymes.

Authors:  H Käck; J Sandmark; K Gibson; G Schneider; Y Lindqvist
Journal:  J Mol Biol       Date:  1999-08-27       Impact factor: 5.469

2.  Crystal structure of the pyridoxal 5'-phosphate dependent L-methionine gamma-lyase from Pseudomonas putida.

Authors:  H Motoshima; K Inagaki; T Kumasaka; M Furuichi; H Inoue; T Tamura; N Esaki; K Soda; N Tanaka; M Yamamoto; H Tanaka
Journal:  J Biochem       Date:  2000-09       Impact factor: 3.387

3.  Improved methods for building protein models in electron density maps and the location of errors in these models.

Authors:  T A Jones; J Y Zou; S W Cowan; M Kjeldgaard
Journal:  Acta Crystallogr A       Date:  1991-03-01       Impact factor: 2.290

4.  Modeling of the spatial structure of eukaryotic ornithine decarboxylases.

Authors:  N V Grishin; M A Phillips; E J Goldsmith
Journal:  Protein Sci       Date:  1995-07       Impact factor: 6.725

5.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 6.  Structure, evolution and action of vitamin B6-dependent enzymes.

Authors:  J N Jansonius
Journal:  Curr Opin Struct Biol       Date:  1998-12       Impact factor: 6.809

7.  Motifs and structural fold of the cofactor binding site of human glutamate decarboxylase.

Authors:  K Qu; D L Martin; C E Lawrence
Journal:  Protein Sci       Date:  1998-05       Impact factor: 6.725

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Authors:  R A John
Journal:  Biochim Biophys Acta       Date:  1995-04-27

9.  Properties of L-methionine gamma-lyase from Pseudomonas ovalis.

Authors:  H Tanaka; N Esaki; K Soda
Journal:  Biochemistry       Date:  1977-01-11       Impact factor: 3.162

10.  Evolutionary relationships among pyridoxal-5'-phosphate-dependent enzymes. Regio-specific alpha, beta and gamma families.

Authors:  F W Alexander; E Sandmeier; P K Mehta; P Christen
Journal:  Eur J Biochem       Date:  1994-02-01
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  11 in total

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Authors:  Nikita A Kuznetsov; Nicolai G Faleev; Alexandra A Kuznetsova; Elena A Morozova; Svetlana V Revtovich; Natalya V Anufrieva; Alexei D Nikulin; Olga S Fedorova; Tatyana V Demidkina
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2.  Structure of methionine γ-lyase from Clostridium sporogenes.

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Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-01       Impact factor: 1.056

3.  Expression, purification and crystallization of L-methionine gamma-lyase 2 from Entamoeba histolytica.

Authors:  Dan Sato; Wataru Yamagata; Kaeko Kamei; Tomoyoshi Nozaki; Shigeharu Harada
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2006-09-30

4.  Crystallization and preliminary X-ray analysis of L-methionine gamma-lyase 1 from Entamoeba histolytica.

Authors:  Dan Sato; Tsuyoshi Karaki; Akira Shimizu; Kaeko Kamei; Shigeharu Harada; Tomoyoshi Nozaki
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-07-05

5.  Expression, purification and preliminary crystallographic analysis of O-acetylhomoserine sulfhydrylase from Mycobacterium tuberculosis.

Authors:  Jiang Yin; Craig R Garen; Katherine Bateman; Minmin Yu; Emily Z Alipio Lyon; Jeff Habel; Heungbok Kim; Li-wei Hung; Chang-Yub Kim; Michael N G James
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6.  Origin of the allyl group in FK506 biosynthesis.

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Review 7.  L-methionase: a therapeutic enzyme to treat malignancies.

Authors:  Bhupender Sharma; Sukhdev Singh; Shamsher S Kanwar
Journal:  Biomed Res Int       Date:  2014-08-31       Impact factor: 3.411

8.  X-Ray snapshots of a pyridoxal enzyme: a catalytic mechanism involving concerted [1,5]-hydrogen sigmatropy in methionine γ-lyase.

Authors:  Dan Sato; Tomoo Shiba; Tsuyoshi Karaki; Wataru Yamagata; Tomoyoshi Nozaki; Takashi Nakazawa; Shigeharu Harada
Journal:  Sci Rep       Date:  2017-07-07       Impact factor: 4.379

9.  A Key Silencing Histone Mark on Chromatin Is Lost When Colorectal Adenocarcinoma Cells Are Depleted of Methionine by Methionine γ-Lyase.

Authors:  Samanta Raboni; Serena Montalbano; Stephanie Stransky; Benjamin A Garcia; Annamaria Buschini; Stefano Bettati; Simone Sidoli; Andrea Mozzarelli
Journal:  Front Mol Biosci       Date:  2021-10-01

10.  Kinetic Parameters and Cytotoxic Activity of Recombinant Methionine γ-Lyase from Clostridium tetani, Clostridium sporogenes, Porphyromonas gingivalis and Citrobacter freundii.

Authors:  E A Morozova; V V Kulikova; D V Yashin; N V Anufrieva; N Y Anisimova; S V Revtovich; M I Kotlov; Y F Belyi; V S Pokrovsky; T V Demidkina
Journal:  Acta Naturae       Date:  2013-07       Impact factor: 1.845

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