Literature DB >> 16511081

Purification, crystallization and preliminary X-ray diffraction studies of the archaeal virus resolvase SIRV2.

Eric Ennifar1, Jerôme Basquin, Rainer Birkenbihl, Dietrich Suck.   

Abstract

The Holliday junction (or four-way junction) is the universal DNA intermediate whose interaction with resolving proteins is one of the major events in the recombinational process. These proteins, called DNA junction-resolving enzymes or resolvases, bind to the junction and catalyse DNA cleavage, promoting the release of two DNA duplexes. SIRV2 Hjc, a viral resolvase infecting a thermophylic archaeon, has been cloned, expressed and purified. Crystals have been obtained in space group C2, with unit-cell parameters a = 147.8, b = 99.9, c = 87.6, beta = 109.46 degrees, and a full data set has been collected at 3.4 A resolution. The self-rotation function indicates the presence of two dimers in the asymmetric unit and a high solvent content (77%). Molecular-replacement trials using known similar resolvase structures have so far been unsuccessful, indicating possible significant structural rearrangements.

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Year:  2005        PMID: 16511081      PMCID: PMC1952314          DOI: 10.1107/S1744309105011528

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  9 in total

1.  Crystal structure of the archaeal holliday junction resolvase Hjc and implications for DNA recognition.

Authors:  T Nishino; K Komori; D Tsuchiya; Y Ishino; K Morikawa
Journal:  Structure       Date:  2001-03-07       Impact factor: 5.006

2.  Conformational flexibility in T4 endonuclease VII revealed by crystallography: implications for substrate binding and cleavage.

Authors:  H Raaijmakers; I Törö; R Birkenbihl; B Kemper; D Suck
Journal:  J Mol Biol       Date:  2001-04-27       Impact factor: 5.469

3.  Holliday junction resolving enzymes of archaeal viruses SIRV1 and SIRV2.

Authors:  R P Birkenbihl; K Neef; D Prangishvili; B Kemper
Journal:  J Mol Biol       Date:  2001-06-22       Impact factor: 5.469

4.  Structure of Hjc, a Holliday junction resolvase, from Sulfolobus solfataricus.

Authors:  C S Bond; M Kvaratskhelia; D Richard; M F White; W N Hunter
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

5.  Mutational analysis of the Pyrococcus furiosus holliday junction resolvase hjc revealed functionally important residues for dimer formation, junction DNA binding, and cleavage activities.

Authors:  K Komori; S Sakae; H Daiyasu; H Toh; K Morikawa; H Shinagawa; Y Ishino
Journal:  J Biol Chem       Date:  2000-12-22       Impact factor: 5.157

6.  Processing of X-ray diffraction data collected in oscillation mode.

Authors:  Z Otwinowski; W Minor
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

7.  Crystallization and preliminary X-ray diffraction studies of Hje, a HolliDay junction resolving enzyme from Sulfolobus solfataricus.

Authors:  Claire L Middleton; Joanne L Parker; Derek J Richard; Malcolm F White; Charles S Bond
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19

Review 8.  The junction-resolving enzymes.

Authors:  D M Lilley; M F White
Journal:  Nat Rev Mol Cell Biol       Date:  2001-06       Impact factor: 94.444

9.  Substrate recognition and catalysis by the Holliday junction resolving enzyme Hje.

Authors:  Claire L Middleton; Joanne L Parker; Derek J Richard; Malcolm F White; Charles S Bond
Journal:  Nucleic Acids Res       Date:  2004-10-12       Impact factor: 16.971

  9 in total
  3 in total

1.  Characterization of crystals of the Hjc resolvase from Archaeoglobus fulgidus grown in gel by counter-diffusion.

Authors:  Christian Biertümpfel; Jérôme Basquin; Rainer P Birkenbihl; Dietrich Suck; Claude Sauter
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-06-15

2.  Crystallization and preliminary X-ray diffraction studies of the WW4 domain of the Nedd4-2 ubiquitin-protein ligase.

Authors:  N Umadevi; S Kumar; N Narayana
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-11-24

3.  The Novel Halovirus Hardycor1, and the Presence of Active (Induced) Proviruses in Four Haloarchaea.

Authors:  Mike Dyall-Smith; Friedhelm Pfeiffer; Pei-Wen Chiang; Sen-Lin Tang
Journal:  Genes (Basel)       Date:  2021-01-23       Impact factor: 4.096

  3 in total

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